Cohesion Group Gene Nbd Subhomology Group Domain Phylum Class Order Family Genus Genome Name Acronym IMG Taxon ID NCBI Taxon ID IMG ID SEED ID Strain-level Gene Neighborhood Locus Tag Fused Domains Ask CDD ACT CDD KFGG Motif KYGG Motif KIGG Motif PDB ID # of Ask's Hdh present? Threonine Deaminase Present? Citramalate Synthase Present? Hdh-thr Hdh-met Hdh-min Internal Start
1 Gene Neighborhood alpha Eukaryota Fungi Ascomycota Pezizomycotina Eurotiomycetes Aspergillus Aspergillus fumigatus Af293 Afum_Aa 638208601 330879 638265513 - - Afu5g05590 cd04247 cd04934/cd04919 1 0 0 1 Yes Yes No 638263406 absent
1 Gene Neighborhood alpha Eukaryota Fungi Ascomycota Saccharomycetales Saccharomycetaceae Pichia Pichia stipitis CBS 6054 Psti_Aa 640281010 322104 640392646 - - PICST_69242 cd04247 cd04934/cd04919 1 0 0 1 Yes Yes No 640389232 absent
1 Gene Neighborhood alpha Eukaryota Fungi Ascomycota Saccharomycotina Saccharomycetes Saccharomyces Saccharomyces cerevisiae S288c Scer_Aa 638208609 559292 638210220 fig|4932.3.peg.2035 - YER052C cd04247 cd04934/cd04919 1 0 0 1 Yes Yes No 638211958 absent
1 Gene Neighborhood alpha Eukaryota Fungi Basidiomycota Hymenomycetes Tremellaceae Cryptococcus Cryptococcus neoformans var. neoformans JEC21 Fneo_Aa 638208604 214684 638258689 - - CNI02030 cd04247 cd04934/cd04919 0 1 0 1 Yes Yes No 638253362 absent
2 Gene Neighborhood alpha Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Hyphomonadaceae Hyphomonas Hyphomonas neptunium ATCC 15444 Hnep_Aa 637000135 228405 638144206 fig|228405.5.peg.1588 - HNE_1643 cd04248 cd04910/cd04915 0 0 1 2 Yes No No 638144870 absent
2 Gene Neighborhood alpha Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Silicibacter Silicibacter sp. TM1040 SILI-1b 637000268 292414 638005851 fig|292414.1.peg.2281 - TM1040_0554 cd04248 cd04910/cd04915 0 0 1 2 Yes Yes No 638007484 absent
2 Gene Neighborhood alpha Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae Acidiphilium Acidiphilium cryptum JF-5 Acry_Ab 640427101 349163 640554942 fig|349163.4.peg.3469 - Acry_3012 cd04248 cd04910/cd04915 0 0 1 2 Yes No No 640553214 absent
2 Gene Neighborhood alpha Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingopyxis Sphingopyxis alaskensis RB2256 Sala_Ab 637000271 317655 638011338 fig|317655.9.peg.2810 - Sala_2953 cd04248 cd04910/cd04915 0 0 1 2 Yes No No 638009171 absent
2 Gene Neighborhood alpha Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobulbaceae Desulfococcus Desulfococcus oleovorans Hxd3 Dole_Ab 641228490 96561 641263556 fig|96561.3.peg.959 - Dole_0959 cd04248 cd04910/cd04915 0 0 1 2 Yes No No 641262872 absent
2 Gene Neighborhood alpha Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobulbaceae Desulfotalea Desulfotalea psychrophila LSv54 Dpsy_Aa 637000094 177439 637527702 fig|177439.1.peg.451 - DP0451 cd04248 cd04910/cd04915 0 0 1 1 Yes Yes No 637529033 absent
2 Gene Neighborhood alpha Bacteria Proteobacteria Deltaproteobacteria Myxococcales Myxococcacea Anaeromyxobacter Anaeromyxobacter dehalogenans 2CP-C Adeh_Ab 637000007 290397 637863352 fig|290397.13.peg.1809 - Adeh_1815 cd04248 cd04910/cd04915 0 0 1 2 Yes No No 637863174 637862929 637865489 absent
2 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-upper Alteromonadales Alteromonadaceae Marinobacter Marinobacter aquaeolei VT8 Mhyd_Ab 639633037 351348 639810106 fig|351348.5.peg.499 - Maqu_0149 cd04248 cd04910/cd04915 0 0 1 2 Yes Yes No 639812248 absent
2 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-upper Alteromonadales Alteromonadaceae Saccharophagus Saccharophagus degradans 2-40 Sdeg_Ab 637000249 203122 637920266 fig|203122.12.peg.1190 - Sde_1192 cd04248 cd04910/cd04915 0 0 1 2 Yes Yes No 637920283 absent
2 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-upper Chromatiales Chromatiaceae Nitrosococcus Nitrosococcus oceani ATCC 19707 Noce_Ab 637000194 323261 637737534 fig|323261.3.peg.76 - Noc_1029 cd04248 cd04910/cd04915 0 0 1 2 Yes Yes No 637738933 absent
2 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-upper Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas sp. MWYL1 MARI_Ab 640753033 400668 640803501 fig|400668.6.peg.1181 - Mmwyl1_1162 cd04248 cd04910/cd04915 0 0 1 2 Yes Yes No 640806148 absent
2 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-upper Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas stutzeri A1501 Pstu_Ab 640427133 379731 640486133 - - PST_0177 cd04248 cd04910/cd04915 0 0 1 2 Yes Yes No 640487154 absent
2 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-upper Thiotrichales Piscirickettsiaceae Thiomicrospira Thiomicrospira crunogena XCL-2 Tcru_Ab 637000325 317025 637785232 fig|317025.3.peg.468 - Tcr_0521 cd04248 cd04910/cd04915 0 0 1 2 Yes Yes No 637785983 absent
2 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Photobacterium Photobacterium profundum SS9 Ppro_Ba 637000206 298386 637589809/637589811 fig|298386.1.peg.1604 fig|314280.3.peg.2032, Photobacterium profundum 3TCK
Gene Neighborhood PBPRB1487/1489 cd04248 cd04910/cd04915 0 0 1 5 Yes Yes No absent
2 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio cholerae O1 biovar eltor str. N16961 Vcho_Fa 637000333 243277 637050092 fig|243277.1.peg.3549 fig|345073.6.peg.359, Vibrio cholerae O395
fig|404974.3.peg.11, Vibrio cholerae AM-19226
fig|412966.3.peg.2266, Vibrio cholerae 1587
fig|88888881.3.peg.1365, Vibrio cholerae NRT36s
Gene Neighborhood VCA0822 cd04248 cd04910/cd04915 0 0 1 5 Yes Yes No absent
2 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio fischeri ES114 Vfis_Ac 637000334 312309 637638477 fig|312309.3.peg.3741 fig|388396.7.peg.3767, Vibrio fischeri MJ11
Gene Neighborhood VFA1125 cd04248 cd04910/cd04915 0 0 1 5 Yes Yes No absent
2 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus RIMD 2210633 Vpar_Ac 637000335 223926 637398698 fig|223926.1.peg.1719 fig|419109.12.peg.391, Vibrio parahaemolyticus AQ3810
Gene Neighborhood VP1719 cd04248 cd04910/cd04915 0 0 1 5 Yes Yes No absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus clausii KSM-K16 Bcla_Ab 637000019 66692 637620119 fig|66692.3.peg.1711 - ABC1763 cd04245 cd04911/cd04916 1 0 0 2 Yes Yes No 637621311 637619929 637618323 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus halodurans C-125 Bhal-1_Ac 637000020 272558 637058202 fig|272558.1.peg.1500 - BH1500 cd04245 cd04911/cd04916 1 0 0 3 Yes Yes No 637060139 637057951 637058439 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus licheniformis ATCC 14580 (Goettingen) Blic_Ac 639279303 279010 639309654 fig|279010.5.peg.2450 - BLi00462 cd04245 cd04911/cd04916 1 0 0 3 Yes Yes No 639312540 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus subtilis 168 Bsub_Ac 637000022 224308 637030502 fig|224308.1.peg.380 - BSU03790 cd04245 cd04911/cd04916 1 0 0 3 Yes Yes No 637033411 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Bacillales Bacillaceae Geobacillus Geobacillus kaustophilus HTA426 Gkau_Ab 637000118 235909 637600008 fig|235909.3.peg.3237 - GK3195 cd04245 cd04911/cd04916 1 0 0 2 Yes Yes No 637599776 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Bacillales Bacillaceae Oceanobacillus Oceanobacillus iheyensis HTE831 Oihe_Ab 637000201 221109 637325517 fig|221109.1.peg.1871 - OB1871 cd04245 cd04911/cd04916 1 0 0 2 Yes No No 637324081 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria innocua Clip11262 Linn_Ac 637000152 272626 637225247 fig|272626.1.peg.2456 - lin2473 cd04245 cd04911/cd04916 1 0 0 3 Yes Yes No 637225465 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes 4b F2365 Lmon_Ac 637000154 265669 637166144 fig|265669.1.peg.2321 fig|169963.1.peg.2364, Listeria monocytogenes EGD-e
fig|267409.1.peg.1167, Listeria monocytogenes str. 1/2a F6854
fig|393117.3.peg.2606, Listeria monocytogenes FSL J1-194
fig|393121.3.peg.2605, Listeria monocytogenes FSL J2-071
fig|393123.3.peg.2334, Listeria monocytogenes FSL N1-017
fig|393124.3.peg.1966, Listeria monocytogenes FSL N3-165
fig|393128.3.peg.2377, Listeria monocytogenes F6900
fig|393130.3.peg.1478, Listeria monocytogenes J0161
fig|393131.3.peg.2281, Listeria monocytogenes J2818
fig|393133.3.peg.901, Listeria monocytogenes 10403S
fig|401650.3.peg.2414, Listeria monocytogenes Aureli 1997
Gene Neighborhood LMOf2365_2345 cd04245 cd04911/cd04916 1 0 0 3 Yes Yes No 637166319 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria welshimeri sv 6b SLCC5334 Lwel_Ac 639633035 386043 639707265 fig|386043.6.peg.2260 - lwe2323 cd04245 cd04911/cd04916 1 0 0 3 Yes Yes No 639707439 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus aureus COL Saur_Ab 637000273 93062 637152113 fig|93062.4.peg.1448 fig|158878.1.peg.1327, Staphylococcus aureus subsp. aureus Mu50
fig|158879.1.peg.1203, Staphylococcus aureus subsp. aureus N315
fig|196620.1.peg.1214, Staphylococcus aureus subsp. aureus MW2
fig|282458.1.peg.1261, Staphylococcus aureus subsp. aureus MRSA252
fig|282458.1.peg.2690, Staphylococcus aureus subsp. aureus MRSA252
fig|282459.1.peg.1259, Staphylococcus aureus subsp. aureus MSSA476
fig|282459.1.peg.2608, Staphylococcus aureus subsp. aureus MSSA476
fig|359786.3.peg.1241, Staphylococcus aureus subsp. aureus JH9
fig|367830.3.peg.986, Staphylococcus aureus subsp. aureus USA300
fig|418127.4.peg.1220, Staphylococcus aureus subsp. aureus Mu3
fig|426430.6.peg.1203, Staphylococcus aureus subsp. aureus str. Newman
fig|93061.3.peg.1280, Staphylococcus aureus subsp. aureus NCTC 8325
fig|273036.3.peg.1536, Staphylococcus aureus RF122
Gene Neighborhood SACOL1360 cd04245 cd04911/cd04916 1 0 0 2 Yes Yes No 637152115 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis RP62A Sepi_Ab 637000282 176279 637167552 fig|176279.3.peg.976 fig|176280.1.peg.1008, Staphylococcus epidermidis ATCC 12228
Gene Neighborhood SERP0896 cd04245 cd04911/cd04916 1 0 0 2 Yes Yes No 637167553 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus haemolyticus JCSC1435 Shae_Ab 637000283 279808 637667565 fig|279808.3.peg.2484 - SH1580 cd04245 cd04911/cd04916 1 0 0 2 Yes Yes No 637667564 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus saprophyticus saprophyticus ATCC 15305 Ssap_Ab 637000284 342451 637696830 fig|342451.4.peg.856 - SSP1439 cd04245 cd04911/cd04916 1 0 0 2 Yes Yes No 637696829 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis V583 Efae_Aa 637000101 226185 637413642 fig|226185.1.peg.345 - EF0368 cd04245 cd04911/cd04916 1 0 0 1 Yes No No 637415584 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus acidophilus NCFM Laci_Aa 637000138 272621 637626454 fig|272621.3.peg.1142 - LBA1215 cd04245 cd04911/cd04916 1 0 0 2 Yes No No 637626452 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus acidophilus NCFM Laci_Ab 637000138 272621 637626114 fig|272621.3.peg.171 - LBA0850 cd04245 cd04911/cd04916 1 0 0 2 Yes No No 637626452 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus casei ATCC 334 Lcas_Ab 639633028 321967 639663080 fig|321967.8.peg.110 - LSEI_0099 cd04245 cd04911/cd04916 1 0 0 2 Yes No No 639665076 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus casei ATCC 334 Lcas_Aa 639633028 321967 639665077 fig|321967.8.peg.2098 - LSEI_2152 cd04245 cd04911/cd04916 1 0 0 2 Yes No No 639665076 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus delbrueckii bulgaricus ATCC 11842 Ldel_Ba 637000139 390333 638012589 - fig|321956.5.peg.1088, Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Ldb1349 cd04245 cd04911/cd04916 1 0 0 1 Yes No No 638012590 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus gasseri ATCC 33323 Lgas_Aa 639633030 324831 639672919 fig|324831.10.peg.1014 fig|1596.1.peg.176, Lactobacillus gasseri
Gene Neighborhood LGAS_1078 cd04245 cd04911/cd04916 1 0 0 1 Yes No No 639672916 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus plantarum WCFS1 Lpla_Ab 637000141 220668 637389415 fig|220668.1.peg.1919 - lp_2308 cd04245 cd04911/cd04916 1 0 0 2 Yes No No 637387915 637389605 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus reuteri F275 Lreu_Aa 640427118 299033 640590446 fig|299033.6.peg.602 - Lreu_0611 cd04245 cd04911/cd04916 1 0 0 1 No No No absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus pentosaceus ATCC 25745 Ppen_Aa 639633049 278197 639661294 fig|278197.10.peg.121 - PEPE_0137 cd04245 cd04911/cd04916 1 0 0 1 No No No absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Lactobacillales Leuconostocaceae Leuconostoc Leuconostoc mesenteroides mesenteroides ATCC 8293 Lmes_Ba 639633034 203120 639674492 fig|203120.4.peg.767 - LEUM_0784 cd04245 cd04911/cd04916 1 0 0 1 Yes Yes No 639674494 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Lactobacillales Leuconostocaceae Oenococcus Oenococcus oeni PSU-1 Ooen_Aa 639633047 203123 639669713 fig|203123.1.peg.1867 - OEOE_1544 cd04245 cd04911/cd04916 1 0 0 1 Yes No No 639669715 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis cremoris MG1363 Llac_Ca 640069315 416870 640102214 fig|416870.7.peg.1819 fig|272622.8.peg.923, Lactococcus lactis subsp. cremoris SK11
fig|272623.1.peg.759, Lactococcus lactis subsp. lactis Il1403
Gene Neighborhood llmg_1820 cd04245 cd04911/cd04916 1 0 0 1 Yes Yes No 640101757 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae 2603V/R Saga_Ba 637000285 208435 637315536 fig|208435.1.peg.337 fig|205921.3.peg.315, Streptococcus agalactiae A909
fig|342613.3.peg.705, Streptococcus agalactiae 18RS21
fig|211110.1.peg.326, Streptococcus agalactiae NEM316
Gene Neighborhood SAG0339 cd04245 cd04911/cd04916 1 0 0 1 Yes No No 637316302 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mutans UA159 Smut_Aa 637000288 210007 637348244 fig|210007.1.peg.1588 - SMU.1748 cd04245 cd04911/cd04916 1 0 0 1 Yes Yes No 637347527 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae R6 Spne_Aa 637000289 171101 637191494 fig|171101.1.peg.374 fig|373153.25.peg.407, Streptococcus pneumonia pneumoniae D39
fig|406557.4.peg.393, Streptococcus pneumoniae SP6-BS73
fig|406558.4.peg.1412, Streptococcus pneumoniae SP9-BS68
fig|453363.3.peg.41, Streptococcus pneumonia SP195
fig|453364.7.peg.187, Streptococcus pneumoniae CDC0288-04
fig|453364.8.peg.192, Streptococcus pneumoniae CDC0288-04
fig|516950.3.peg.431, Streptococcus pneumoniae CGSP14
fig|1313.5.peg.1593, Streptococcus pneumoniae OXC141
fig|170187.1.peg.383, Streptococcus pneumoniae TIGR4
fig|216600.3.peg.326, Streptococcus pneumoniae 23F
fig|406556.4.peg.279, Streptococcus pneumoniae SP3-BS71
fig|406559.4.peg.369, Streptococcus pneumoniae SP11-BS70
fig|406560.4.peg.1710, Streptococcus pneumoniae SP14-BS69
fig|406561.4.peg.2139, Streptococcus pneumoniae SP18-BS74
fig|406562.4.peg.2078, Streptococcus pneumoniae SP19-BS75
fig|406563.4.peg.1829, Streptococcus pneumoniae SP23-BS72
fig|453361.3.peg.53, Streptococcus pneumoniae CDC1087-00
fig|453362.3.peg.69, Streptococcus pneumoniae CDC1873-00
fig|487214.3.peg.512, Streptococcus pneumoniae Hungary19A-6
Gene Neighborhood spr0374 cd04245 cd04911/cd04916 1 0 0 1 Yes Yes No 637192344 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sanguinis SK36 Ssan_Aa 640069334 388919 640104975 fig|388919.8.peg.1726 - SSA_1943 cd04245 cd04911/cd04916 1 0 0 1 Yes Yes No 640104096 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis 05ZYH33 Ssui_Aa 640427146 391295 640515160 - fig|1307.2.peg.1263, Streptococcus suis
SSU05_1811 cd04245 cd04911/cd04916 1 0 0 1 Yes Yes No 640514148 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus thermophilus CNRZ1066 Sthe_Aa 637000302 299768 637592794 fig|299768.3.peg.1445 fig|322159.7.peg.374, Streptococcus thermophilus LMD-9
fig|264199.3.peg.1235, Streptococcus thermophilus LMG 18311
Gene Neighborhood str0378 cd04245 cd04911/cd04916 1 0 0 1 Yes Yes No 637592882 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium acetobutylicum ATCC 824 Cace_Ab 637000076 272562 637175937 fig|272562.1.peg.448 - CAC0278 cd04245 cd04911/cd04916 1 0 0 2 Yes No No 637176669 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium botulinum A ATCC 3502 Cbot_Bc 640427109 413999 640573237 fig|413999.4.peg.1559 fig|441770.4.peg.1542, Clostridium botulinum A str. ATCC 19397
fig|441771.4.peg.1541, Clostridium botulinum A str. Hall
Gene Neighborhood CBO1640 cd04245 cd04911/cd04916 1 0 0 3 Yes No No 640573238 640573473 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium novyi NT Cnov_Ab 639633021 386415 639732718 - - NT01CX_0187 cd04245 cd04911/cd04916 1 0 0 2 Yes No No 639730992 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium tetani E88 Ctet_Ab 637000080 212717 637387085 fig|212717.1.peg.2115 - CTC02356 cd04245 cd04911/cd04916 1 0 0 2 Yes No No 637387084 637385729 absent
3 Gene Neighborhood alpha Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium thermocellum ATCC 27405 Cthe_Aa 640069309 203119 640106799 - - Cthe_1375 cd04245 cd04911/cd04916 1 0 0 1 Yes No No 640105702 640106800 absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Aeromonadales Aeromonadaceae Aeromonas Aeromonas hydrophila hydrophila ATCC 7966 Ahyd_Ac 639633004 380703 639715593 fig|380703.5.peg.2884 - AHA_3018 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 4 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Aeromonadales Aeromonadaceae Aeromonas Aeromonas salmonicida salmonicida A449 Asal_Ad 641522605 382245 640465941 fig|382245.6.peg.2842 - ASA_3040 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 4 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Colwelliaceae Colwellia Colwellia psychrerythraea 34H Cpsy_Ab 637000081 167879 637286732 fig|167879.3.peg.4481 - CPS_4291 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 3 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Pseudoalteromonadaceae Pseudoalteromona Pseudoalteromonas atlantica T6c Patl_Ab 637000216 342610 638056610 fig|342610.3.peg.1699 - Patl_3580 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 2 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Pseudoalteromonadaceae Pseudoalteromona Pseudoalteromonas haloplanktis TAC125 Phal_Ad 637000217 326442 637735307 fig|326442.4.peg.2446 - PSHAa2379 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 4 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Psychromonadaceae Psychromonas Psychromonas ingrahamii 37 Ping_Ab 639633052 357804 639796485 fig|357804.5.peg.1231 - Ping_1275 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 2 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella amazonensis SB2B Sama_Ad 639633057 326297 639780240 fig|326297.7.peg.852 - Sama_0905 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 4 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella baltica OS155 Sbal_Ad 640069330 325240 640118446 fig|325240.9.peg.1471 fig|399599.3.peg.1330, Shewanella baltica OS195
fig|402882.10.peg.1391, Shewanella baltica OS185
Gene Neighborhood Sbal_1227 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 4 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella denitrificans OS217 Sden_Ab 637000256 318161 637956786 fig|318161.14.peg.2663 - Sden_2740 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 3 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella frigidimarina NCIMB 400 Sfri_Ac 637000257 318167 638135726 fig|318167.10.peg.2789 - Sfri_2906 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 3 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella loihica PV-4 Sloi_Ac 640069331 323850 640162612 fig|323850.3.peg.86 - Shew_1079 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 3 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella oneidensis MR-1 Sone_Ad 637000258 211586 637345216 fig|211586.1.peg.3113 - SO3415 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 4 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella putrefaciens CN-32 Sput_Ad 640427141 319224 640499921 fig|319224.13.peg.2518 fig|351745.7.peg.1192, Shewanella sp. W3-18-1
Gene Neighborhood Sputcn32_2735 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 4 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella sp. ANA-3 SHEW-3d 639633058 94122 639725690 fig|94122.5.peg.1258 fig|60480.16.peg.1085, Shewanella sp. MR-4
fig|60481.10.peg.1151, Shewanella sp. MR-7
fig|323850.3.peg.86, Shewanella sp. PV-4
fig|351745.7.peg.1192, Shewanella sp. W3-18-1
Gene Neighborhood Shewana3_1139 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 4 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Blochmannia Candidatus Blochmannia floridanus Bflo_a 637000056 203907 637443585 fig|203907.1.peg.104 - Bfl111 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 1 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Buchnera Buchnera aphidicola APS Baph_Aa 637000043 107806 637056212 fig|107806.1.peg.193 fig|198804.1.peg.182, Buchnera aphidicola str. Sg (Schizaphis graminum)
fig|224915.1.peg.171, Buchnera aphidicola str. Bp (Baizongia pistaciae)
Gene Neighborhood BU194 Ask/Hdh cd04257 cd04921/cd04892 1 0 0 1 Yes No No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Enterobacter Enterobacter sp. 638 ENTE-2c 640427113 399742 640490735 fig|399742.4.peg.618 - Ent638_0564 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 3 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Erwinia Erwinia carotovora atroseptica SCRI1043 Patr_Ac 637000102 218491 637380378 fig|218491.3.peg.2535 - ECA3891 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 3 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli K12 Ecol_Ac 637000106 83333 637013380 fig|83333.1.peg.2 fig|216593.1.peg.3579, Escherichia coli E2348/69
fig|340197.3.peg.3254, Escherichia coli F11
fig|216592.1.peg.4424, Escherichia coli 042
fig|340184.3.peg.2497, Escherichia coli B7A
fig|340185.3.peg.4022, Escherichia coli E22
fig|344601.3.peg.3512, Escherichia coli B171
fig|344610.3.peg.751, Escherichia coli 53638
fig|481805.3.peg.3926, Escherichia coli ATCC 8739
Gene Neighborhood b0002 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 3 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Photorhabdus Photorhabdus luminescens laumondii TTO1 Plum_Ac 637000207 243265 637462394 fig|243265.1.peg.537 - plu0563 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 3 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica enterica sv Typhi Ty2 Sent_Nc 637000253 209261 637403850 fig|209261.1.peg.2 fig|220341.1.peg.2, Salmonella enterica subsp. enterica serovar Typhi str. CT18
fig|594.1.peg.4953, Salmonella enterica subsp. enterica serovar Gallinarum
fig|295319.3.peg.223, Salmonella enterica subsp. enterica serovar Paratypi A str. ATCC 9150
fig|321314.4.peg.142, Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Gene Neighborhood t0002 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 3 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Salmonella Salmonella typhimurium LT2 Styp_Ac 637000255 99287 637210757 fig|99287.1.peg.2 - STM0002 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 3 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Shigella Shigella boydii Sb227 Sboy_Ab 637000261 300268 637805820 - fig|344609.3.peg.4330, Shigella boydii BS512
SBO_0001 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 2 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Shigella Shigella dysenteriae Sd197 Sdys_Ac 640427142 300267 640432437 - fig|216598.1.peg.2076, Shigella dysenteriae M131649
SDY_0002 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 3 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Shigella Shigella flexneri 2a 2457T Sfle_Ac 637000263 198215 637422189 fig|198215.1.peg.2 fig|198214.1.peg.2, Shigella flexneri 2a str. 301
Gene Neighborhood S0002 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 3 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Shigella Shigella sonnei Ss046 Sson_Ac 640427143 300269 640427857 fig|300269.3.peg.62 fig|216599.1.peg.3714, Shigella sonnei 53G
Gene Neighborhood SSON_0002 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 3 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Sodalis Sodalis glossinidius morsitans Sglo_Ab 637000270 343509 637852336 fig|343509.6.peg.952 - SG0404 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 2 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Wigglesworthia Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis Wglo_Aa 637000338 36870 637341983 fig|36870.1.peg.589 - WGLp591 Ask/Hdh cd04257 1 0 0 1 Yes No No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Yersinia Yersinia enterocolitica enterocolitica 8081 Yent_Aa 640069335 393305 640074179 fig|630.2.peg.580 - YE0600 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 2 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis CO92 Ypes_Ab 637000351 214092 637199560 fig|214092.1.peg.617 fig|187410.1.peg.3665, Yersinia pestis KIM
fig|229193.1.peg.3590, Yersinia pestis biovar Medievalis str. 91001
fig|349746.3.peg.1093, Yersinia pestis Angola
fig|386656.4.peg.3124, Yersinia pestis Pestoides F
fig|360102.4.peg.4723, Yersinia pestis Antiqua
fig|377628.5.peg.494, Yersinia pestis Nepal516
Gene Neighborhood YPO0459 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 3 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Yersinia Yersinia pseudotuberculosis IP 32953 Ypse_Ab 637000355 273123 637532208 fig|273123.1.peg.728 fig|349747.3.peg.3239, Yersinia pseudotuberculosis IP 31758
fig|502800.3.peg.3557, Yersinia pseudotuberculosis YPIII
Gene Neighborhood YPTB0602 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 3 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae 86-028NP Hinf_Aa 637000125 281310 637662054 fig|281310.3.peg.927 fig|71421.1.peg.88, Haemophilus influenzae Rd KW20
fig|262728.1.peg.1309, Haemophilus influenzae R2866
Gene Neighborhood NTHI0167 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 1 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Pasteurellales Pasteurellaceae Haemophilus Haemophilus somnus 129PT Hsom_Aa 637000127 205914 638104777 fig|205914.5.peg.1262 fig|228400.4.peg.356, Haemophilus somnus 2336
Gene Neighborhood HS_1214 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 1 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Pasteurellales Pasteurellaceae Mannheimia Mannheimia succiniciproducens MBEL55E Msuc_Ab 637000156 221988 637551233 fig|221988.1.peg.1597 - MS1703 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 2 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Pasteurellales Pasteurellaceae Pasteurella Pasteurella multocida multocida Pm70 Pmul_Ab 637000203 272843 637069694 fig|272843.1.peg.113 - PM0113 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 2 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus pleuropneumoniae L20 Aple_Ab 640069302 416269 640121917 fig|416269.5.peg.239 fig|228399.1.peg.1512, Actinobacillus pleuropneumoniae serovar 1 str. 4074
Gene Neighborhood APL_0250 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 2 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Photobacterium Photobacterium profundum SS9 Ppro_Bd 637000206 298386 637585261 fig|298386.1.peg.2778 fig|314280.3.peg.1632, Photobacterium profundum 3TCK
Gene Neighborhood PBPRA0552 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 5 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio cholerae O1 biovar eltor str. N16961 Vcho_Fd 637000333 243277 637048852 fig|243277.1.peg.4235 fig|412967.3.peg.1956, Vibrio cholerae MAK 757
fig|345073.6.peg.2551, Vibrio cholerae O395
fig|404974.3.peg.863, Vibrio cholerae AM-19226
fig|412883.3.peg.2593, Vibrio cholerae MZO-3
fig|88888881.3.peg.198, Vibrio cholerae NRT36s
Gene Neighborhood VC2364 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 5 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio fischeri ES114 Vfis_Ae 637000334 312309 637636816 fig|312309.3.peg.2118 fig|388396.7.peg.2737, Vibrio fischeri MJ11
Gene Neighborhood VF2118 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 5 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus RIMD 2210633 Vpar_Ae 637000335 223926 637397434 fig|223926.1.peg.494 - VP0494 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 5 Yes Yes No absent
4 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio vulnificus CMCP6 Vvul_Ab 637000336 216895 637360958 fig|216895.1.peg.515 fig|196600.1.peg.5087, Vibrio vulnificus YJ016
Gene Neighborhood VV10545 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 4 Yes Yes No absent
5 Gene Neighborhood alpha Bacteria Bacteroidetes Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis NCTC 9343 Bfra_Ab 637000024 272559 637226305 fig|272559.3.peg.67 fig|817.1.peg.3591, Bacteroides fragilis 638R
fig|295405.3.peg.49, Bacteroides fragilis YCH46
Gene Neighborhood BF0558 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 3 Yes No Yes absent
5 Gene Neighborhood alpha Bacteria Bacteroidetes Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides thetaiotaomicron VPI-5482 Bthe_Ab 637000026 226186 637410849 fig|226186.1.peg.2403 - BT2403 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 3 Yes No Yes absent
5 Gene Neighborhood alpha Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium johnsoniae UW101 Fjoh_Ac 640427114 376686 640510815 fig|376686.6.peg.2564 - Fjoh_2575 Ask/Hdh cd04243 cd04921/cd04922 1 0 0 3 Yes Yes Yes 640509711 absent
5 Gene Neighborhood alpha Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium johnsoniae UW101 Fjoh_Ab 640427114 376686 640509713 fig|376686.6.peg.1488 - Fjoh_1494 Ask/Hdh cd04257 cd04921 1 0 0 3 Yes Yes Yes 640509711 absent
5 Gene Neighborhood alpha Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Gramella Gramella forsetii KT0803 Gfor_Ac 639633025 411154 639718830 fig|411154.5.peg.1862 - orf1951 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 3 Yes Yes No 639717178 absent
5 Gene Neighborhood alpha Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Flexibacteraceae Cytophaga Cytophaga hutchinsonii ATCC 33406 Chut_Ab 637000087 269798 638070073 fig|269798.12.peg.67 - CHU_0073 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 2 Yes Yes No absent
5 Gene Neighborhood alpha Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Chlorobium Chlorobium chlorochromatii CaD3 Cchl_Ab 637000072 340177 637772669 fig|340177.8.peg.148 - Cag_0142 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 2 Yes No No absent
5 Gene Neighborhood alpha Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeobacteroides DSM 266 Cpha_Ab 639633020 290317 639767107 fig|290317.7.peg.2658 - Cpha266_2542 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 2 Yes No No absent
5 Gene Neighborhood alpha Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Chlorobium Chlorobium tepidum TLS Ctep_Ab 637000073 194439 637116968 fig|194439.1.peg.1999 - CT2030 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 2 Yes No No absent
5 Gene Neighborhood alpha Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Pelodictyon Pelodictyon luteolum DSM 273 Plut_Ab 637000205 319225 637770014 fig|319225.3.peg.1963 - Plut_1983 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 2 Yes No No absent
5 Gene Neighborhood alpha Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Prosthecochloris Prosthecochloris vibrioformis DSM 265 Pvib_Ab 640427130 290318 640454058 fig|290318.4.peg.1607 - Cvib_1626 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 2 Yes No No absent
6 Gene Neighborhood alpha Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium johnsoniae UW101 Fjoh_Aa 640427114 376686 640508746 fig|376686.6.peg.532 - Fjoh_0535 cd04243 1 0 0 3 Yes Yes Yes 640509711 absent
6 Gene Neighborhood alpha Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Gramella Gramella forsetii KT0803 Gfor_Aa 639633025 411154 639720378 fig|411154.5.peg.3320 - orf3473 cd04243 1 0 0 3 Yes Yes No 639717178 absent
7 Gene Neighborhood alpha Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Crenotrichaceae Salinibacter Salinibacter ruber DSM 13855 Srub_Ac 637000250 309807 637843688 fig|309807.5.peg.640 - SRU_0691 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 4 Yes No No 637843485 absent
7 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-upper Thiotrichales Francisellaceae Francisella Francisella tularensis novicida U112 Ftul_Ab 639633024 401614 639752570 fig|401614.5.peg.517 fig|393011.11.peg.523, Francisella tularensis subsp. holarctica OSU18
fig|393115.8.peg.448, Francisella tularensis subsp. tularensis FSC198
fig|418136.4.peg.1584, Francisella tularensis subsp. tularensis WY96-3418
fig|458234.10.peg.514, Francisella tularensis subsp. holarctica FTA
Gene Neighborhood FTN_0525 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 2 Yes No No absent
7 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-upper Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas axonopodis pv. citri 306 Xaxo_Ab 637000342 190486 637295069 fig|190486.1.peg.1790 - XAC1820 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 2 Yes No No 637296287 absent
7 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-upper Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas campestris pv. campestris ATCC 33913 Xcam_Ab 637000344 190485 637273904 fig|190485.1.peg.1770 fig|314565.3.peg.1693, Xanthomonas campestris pv. campestris str. 8004
fig|316273.3.peg.2221, Xanthomonas campestris pv. vesicatoria str. 85-10
Gene Neighborhood XCC1800 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 2 Yes No No 637274959 absent
7 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-upper Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas oryzae pv. oryzae KACC10331 Xory_Aa 637000346 291331 637632478 fig|291331.3.peg.3247 - XOO2242 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 2 Yes No No 637632098 absent
7 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-upper Xanthomonadales Xanthomonadaceae Xylella Xylella fastidiosa Temecula1 Xfas_Aa 637000349 183190 637384081 fig|183190.1.peg.1216 fig|155920.1.peg.1498, Xylella fastidiosa Ann-1
fig|160492.1.peg.2211, Xylella fastidiosa 9a5c
fig|405440.3.peg.1294, Xylella fastidiosa M12
Gene Neighborhood PD1273 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 2 Yes No No absent
7 Gene Neighborhood alpha Eukaryota Streptophyta rosids Brassicales Brassicaceae Arabidopsis Arabidopsis thaliana Columbia Atha_d 639560100 3702 639576220 fig|3702.1.peg.19799 - AT4G19710 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 5 Yes Yes No 639580575 absent
7 Gene Neighborhood alpha Eukaryota Streptophyta rosids Brassicales Brassicaceae Arabidopsis Arabidopsis thaliana Columbia Atha_e 639560100 3702 639587599 fig|3702.1.peg.3465 - AT1G31230 Ask/Hdh cd04257 cd04921/cd04922 1 0 0 5 Yes Yes No 639580575 absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Aeromonadales Aeromonadaceae Aeromonas Aeromonas hydrophila hydrophila ATCC 7966 Ahyd_Ad 639633004 380703 639713170 fig|380703.5.peg.564 - AHA_0590 Ask/Hdh cd04257 1 0 0 4 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Aeromonadales Aeromonadaceae Aeromonas Aeromonas salmonicida salmonicida A449 Asal_Ac 641522605 382245 640466677 fig|382245.6.peg.3558 - ASA_3796 Ask/Hdh cd04257 1 0 0 4 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Colwelliaceae Colwellia Colwellia psychrerythraea 34H Cpsy_Ac 637000081 167879 637282921 fig|167879.3.peg.574 - CPS_0456 Ask/Hdh cd04257 1 0 0 3 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Idiomarinaceae Idiomarina Idiomarina loihiensis L2TR Iloi_Ab 637000136 283942 637607026 fig|283942.3.peg.2453 - IL2466 Ask/Hdh cd04257 1 0 0 2 Yes No No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Pseudoalteromonadaceae Pseudoalteromona Pseudoalteromonas haloplanktis TAC125 Phal_Ac 637000217 326442 637735651 fig|326442.4.peg.2250 - PSHAa2722 Ask/Hdh cd04257 1 0 0 4 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella amazonensis SB2B Sama_Ac 639633057 326297 639782586 fig|326297.7.peg.2982 - Sama_3170 Ask/Hdh cd04257 1 0 0 4 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella baltica OS155 Sbal_Ac 640069330 325240 640121041 fig|325240.9.peg.4167 fig|399599.3.peg.572, Shewanella baltica OS195
fig|402882.10.peg.619, Shewanella baltica OS185
Gene Neighborhood Sbal_3775 Ask/Hdh cd04257 1 0 0 4 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella denitrificans OS217 Sden_Ac 637000256 318161 637954601 fig|318161.14.peg.600 - Sden_0616 Ask/Hdh cd04257 1 0 0 3 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella frigidimarina NCIMB 400 Sfri_Aa 637000257 318167 638136362 fig|318167.10.peg.3380 - Sfri_3550 Ask/Hdh cd04257 1 0 0 3 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella loihica PV-4 Sloi_Ab 640069331 323850 640162050 fig|323850.3.peg.3078 - Shew_0521 Ask/Hdh cd04257 1 0 0 3 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella oneidensis MR-1 Sone_Ac 637000258 211586 637345799 fig|211586.1.peg.3680 - SO4055 Ask/Hdh cd04257 1 0 0 4 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella putrefaciens CN-32 Sput_Ac 640427141 319224 640497743 fig|319224.13.peg.554 - Sputcn32_0617 Ask/Hdh cd04257 1 0 0 4 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella sp. ANA-3 SHEW-3c 639633058 94122 639728221 fig|94122.5.peg.3605 fig|351745.7.peg.3291, Shewanella sp. W3-18-1
Gene Neighborhood Shewana3_3613 Ask/Hdh cd04257 1 0 0 4 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Enterobacter Enterobacter sp. 638 ENTE-2b 640427113 399742 640494259 fig|399742.4.peg.3836 - Ent638_4034 Ask/Hdh cd04257 1 0 0 3 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Erwinia Erwinia carotovora atroseptica SCRI1043 Patr_Ab 637000102 218491 637380755 fig|218491.3.peg.496 - ECA4251 Ask/Hdh cd04257 1 0 0 3 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli K12 Ecol_Ab 637000106 83333 637017265 fig|83333.1.peg.3859 fig|316407.3.peg.3205, Escherichia coli W3110
fig|331111.3.peg.2094, Escherichia coli E24377A
fig|331112.3.peg.3897, Escherichia coli HS
fig|340184.3.peg.4048, Escherichia coli B7A
fig|340185.3.peg.2265, Escherichia coli E22
fig|344601.3.peg.3752, Escherichia coli B171
fig|344610.3.peg.2178, Escherichia coli 53638
fig|83334.1.peg.4845, Escherichia coli O157:H7
fig|155864.1.peg.4885, Escherichia coli O157:H7 EDL933
fig|340186.3.peg.1247, Escherichia coli E110019
fig|481805.3.peg.4383, Escherichia coli ATCC 8739
Gene Neighborhood b3940 Ask/Hdh cd04257 1 0 0 3 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Photorhabdus Photorhabdus luminescens laumondii TTO1 Plum_Ab 637000207 243265 637466492 fig|243265.1.peg.4538 - plu4755 Ask/Hdh cd04257 1 0 0 3 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica enterica sv Typhi Ty2 Sent_Nb 637000253 209261 637407206 fig|209261.1.peg.3275 fig|220341.1.peg.3342, Salmonella enterica subsp. enterica serovar Typhi str. CT18
fig|321314.4.peg.3491, Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
fig|594.1.peg.4243, Salmonella enterica subsp. enterica serovar Gallinarum
fig|295319.3.peg.3875, Salmonella enterica subsp. enterica serovar Paratypi A str. ATCC 9150
Gene Neighborhood t3517 Ask/Hdh cd04257 1 0 0 3 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Salmonella Salmonella typhimurium LT2 Styp_Ab 637000255 99287 637214797 fig|99287.1.peg.3955 - STM4101 Ask/Hdh cd04257 1 0 0 3 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Shigella Shigella dysenteriae Sd197 Sdys_Ab 640427142 300267 640436000 - fig|216598.1.peg.398, Shigella dysenteriae M131649
SDY_3775 Ask/Hdh cd04257 1 0 0 3 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Shigella Shigella flexneri 2a 2457T Sfle_Ab 637000263 198215 637425477 fig|198215.1.peg.3196 fig|198214.1.peg.3784, Shigella flexneri 2a str. 301
Gene Neighborhood S3729 Ask/Hdh cd04257 1 0 0 3 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Shigella Shigella sonnei Ss046 Sson_Ab 640427143 300269 640431783 fig|300269.3.peg.2930 fig|216599.1.peg.3246, Shigella sonnei 53G
Gene Neighborhood SSON_4114 Ask/Hdh cd04257 1 0 0 3 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Yersinia Yersinia enterocolitica enterocolitica 8081 Yent_Ab 640069335 393305 640073688 fig|630.2.peg.112 - YE0112 Ask/Hdh cd04257 1 0 0 2 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis CO92 Ypes_Ac 637000351 214092 637199230 fig|214092.1.peg.290 fig|187410.1.peg.296, Yersinia pestis KIM
fig|229193.1.peg.116, Yersinia pestis biovar Medievalis str. 91001
fig|386656.4.peg.3714, Yersinia pestis Pestoides F
fig|360102.4.peg.508, Yersinia pestis Antiqua
fig|377628.5.peg.4310, Yersinia pestis Nepal516
Gene Neighborhood YPO0116 Ask/Hdh cd04257 1 0 0 3 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Yersinia Yersinia pseudotuberculosis IP 32953 Ypse_Ac 637000355 273123 637531686 fig|273123.1.peg.241 fig|349747.3.peg.2417, Yersinia pseudotuberculosis IP 31758
fig|502800.3.peg.4039, Yersinia pseudotuberculosis YPIII
Gene Neighborhood YPTB0106 Ask/Hdh cd04257 1 0 0 3 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Photobacterium Photobacterium profundum SS9 Ppro_Be 637000206 298386 637584971 fig|298386.1.peg.2485 fig|314280.3.peg.5300, Photobacterium profundum 3TCK
Gene Neighborhood PBPRA0262 Ask/Hdh cd04257 1 0 0 5 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio cholerae O1 biovar eltor str. N16961 Vcho_Fc 637000333 243277 637049178 fig|243277.1.peg.2653 fig|345072.3.peg.2492, Vibrio cholerae MO10
fig|345073.6.peg.2833, Vibrio cholerae O395
fig|412967.3.peg.523, Vibrio cholerae MAK 757
fig|404974.3.peg.766, Vibrio cholerae AM-19226
Gene Neighborhood VC2684 Ask/Hdh cd04257 1 0 0 5 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio fischeri ES114 Vfis_Ad 637000334 312309 637636979 fig|312309.3.peg.2266 fig|388396.7.peg.974, Vibrio fischeri MJ11
Gene Neighborhood VF2266 Ask/Hdh cd04257 1 0 0 5 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus RIMD 2210633 Vpar_Ad 637000335 223926 637399786 fig|223926.1.peg.2764 - VP2764 Ask/Hdh cd04257 1 0 0 5 Yes Yes No absent
8 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio vulnificus CMCP6 Vvul_Aa 637000336 216895 637361735 fig|216895.1.peg.1255 fig|196600.1.peg.3073, Vibrio vulnificus YJ016
Gene Neighborhood VV11365 Ask/Hdh cd04257 1 0 0 4 Yes Yes No absent
9 Gene Neighborhood alpha Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Crenotrichaceae Salinibacter Salinibacter ruber DSM 13855 Srub_Ad 637000250 309807 637843304 fig|309807.5.peg.269 - SRU_0301 Ask/DAP decarboxylase cd04259 1 0 0 4 Yes No No 637843485 absent
9 Gene Neighborhood alpha Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Hyphomonadaceae Maricaulis Maricaulis maris MCS10 Mmar_Ab 637000157 394221 638139870 fig|394221.5.peg.388 - Mmar10_0407 Ask/DAP decarboxylase cd04259 cd04935/cd04920 1 0 0 3 Yes No No 638142117 absent
9 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-upper Legionellales Legionellaceae Legionella Legionella pneumophila pneumophila Philadelphia Lpne_Aa 637000148 272624 637131750 fig|272624.3.peg.646 fig|297245.3.peg.2054, Legionella pneumophila str. Lens
fig|297246.3.peg.2833, Legionella pneumophila str. Paris
fig|400673.6.peg.1276, Legionella pneumophila str. Corby
Gene Neighborhood lpg1811 Ask/DAP decarboxylase cd04259 cd04935/cd04920 1 0 0 1 No No No absent
9 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-upper Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas axonopodis pv. citri 306 Xaxo_Aa 637000342 190486 637296160 fig|190486.1.peg.2864 - XAC2911 Ask/DAP decarboxylase cd04259 cd04935/cd04920 1 0 0 2 Yes No No 637296287 absent
9 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-upper Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas campestris pv. campestris ATCC 33913 Xcam_Aa 637000344 190485 637274845 fig|190485.1.peg.2694 fig|314565.3.peg.200, Xanthomonas campestris pv. campestris str. 8004
fig|316273.3.peg.3125, Xanthomonas campestris pv. vesicatoria str. 85-10
Gene Neighborhood XCC2741 Ask/DAP decarboxylase cd04259 cd04935/cd04920 1 0 0 2 Yes No No 637274959 absent
9 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-upper Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas oryzae pv. oryzae KACC10331 Xory_Ab 637000346 291331 637631754 fig|291331.3.peg.3410 - XOO1433 Ask/DAP decarboxylase cd04259 cd04935/cd04920 1 0 0 2 Yes No No 637632098 absent
9 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-upper Xanthomonadales Xanthomonadaceae Xylella Xylella fastidiosa Temecula1 Xfas_Ab 637000349 183190 637383234 fig|183190.1.peg.382 fig|155920.1.peg.1233, Xylella fastidiosa Ann-1
fig|160492.1.peg.1113, Xylella fastidiosa 9a5c
fig|405440.3.peg.418, Xylella fastidiosa M12
Gene Neighborhood PD0408 Ask/DAP decarboxylase cd04259 cd04935/cd04920 1 0 0 2 Yes No No absent
9 Gene Neighborhood alpha Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Hyphomonadaceae Oceanicaulis Oceanicaulis alexandrii HTCC2633 Oale_Ab 638341138 314254 638891165 fig|314254.3.peg.404 - OA2633_13100 Ask/DAP decarboxylase cd04259 cd04935/cd04920 1 0 0 3 Yes No No 638891809 absent
10 Gene Neighborhood alpha Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Chlorobium Chlorobium chlorochromatii CaD3 Cchl_Aa 637000072 340177 637774560 fig|340177.8.peg.2077 - Cag_2023 cd04258 cd04912/cd04917 1 0 0 2 Yes No No absent
10 Gene Neighborhood alpha Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeobacteroides DSM 266 Cpha_Aa 639633020 290317 639767148 fig|290317.7.peg.2702 - Cpha266_2583 cd04258 cd04912/cd04917 1 0 0 2 Yes No No absent
10 Gene Neighborhood alpha Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Chlorobium Chlorobium tepidum TLS Ctep_Aa 637000073 194439 637115017 fig|194439.1.peg.95 - CT0095 cd04258 cd04912/cd04892 1 0 0 2 Yes No No absent
10 Gene Neighborhood alpha Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Pelodictyon Pelodictyon luteolum DSM 273 Plut_Aa 637000205 319225 637770091 fig|319225.3.peg.2040 - Plut_2060 cd04258 cd04912/cd04892 1 0 0 2 Yes No No absent
10 Gene Neighborhood alpha Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Prosthecochloris Prosthecochloris vibrioformis DSM 265 Pvib_Aa 640427130 290318 640454134 fig|290318.4.peg.1683 - Cvib_1702 cd04258 cd04912/cd04892 1 0 0 2 Yes No No absent
11 Gene Neighborhood alpha Bacteria Bacteroidetes Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis NCTC 9343 Bfra_Aa 637000024 272559 637228568 fig|272559.3.peg.2881 fig|295405.3.peg.3359, Bacteroides fragilis YCH46
Gene Neighborhood BF2886 cd04243 cd04912/cd04917 1 0 0 3 Yes No Yes absent
11 Gene Neighborhood alpha Bacteria Bacteroidetes Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides thetaiotaomicron VPI-5482 Bthe_Aa 637000026 226186 637409806 fig|226186.1.peg.1375 - BT1375 cd04243 cd04912/cd04917 1 0 0 3 Yes No Yes absent
11 Gene Neighborhood alpha Bacteria Bacteroidetes Bacteroidetes Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas gingivalis W83 Pgin_Aa 637000209 242619 637150757 fig|242619.1.peg.1878 - PG2189 cd04243 cd04912/cd04917 1 0 0 1 No No No absent
11 Gene Neighborhood alpha Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Gramella Gramella forsetii KT0803 Gfor_Ab 639633025 411154 639718410 fig|411154.5.peg.1464 - orf1536 cd04243 cd04912/cd04917 1 0 0 3 Yes Yes No 639717178 absent
11 Gene Neighborhood alpha Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Flexibacteraceae Cytophaga Cytophaga hutchinsonii ATCC 33406 Chut_Aa 637000087 269798 638073708 fig|269798.12.peg.3547 - CHU_3721 cd04243 cd04912/cd04917 1 0 0 2 Yes Yes No absent
11 Gene Neighborhood alpha Bacteria Bacteroidetes Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis NCTC 9343 Bfra_Ac 637000024 272559 637226273 fig|272559.3.peg.584 fig|817.1.peg.3627, Bacteroides fragilis 638R
fig|295405.3.peg.664, Bacteroides fragilis YCH46
Gene Neighborhood BF0526 cd04243 cd04912/cd04917 KFGK 0 0 3 Yes No Yes absent
11 Gene Neighborhood alpha Bacteria Bacteroidetes Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides thetaiotaomicron VPI-5482 Bthe_Ac 637000026 226186 637410344 fig|226186.1.peg.1901 - BT1901 cd04243 cd00000cd04917 KFEK 0 0 3 Yes No Yes absent
12 Gene Neighborhood alpha Bacteria Acidobacteria Acidobacteria Acidobacteriales Acidobacteriaceae Acidobacteria bacterium Ellin345 ACID-2a 637000001 204669 637984508 fig|204669.6.peg.2478 - Acid345_2491 cd04243 cd04912/cd04892 1 0 0 2 Yes No No 637983490 637986196 absent
12 Gene Neighborhood alpha Bacteria Acidobacteria Acidobacteria Acidobacteriales Acidobacteriaceae Acidobacteria bacterium Ellin345 ACID-2b 637000001 204669 637983491 fig|204669.6.peg.1471 - Acid345_1482 cd04243 cd04912/cd04892 1 0 0 2 Yes No No 637983490 637986196 absent
12 Gene Neighborhood alpha Bacteria Acidobacteria Solibacteres Solibacterales Solibacteraceae Solibacter Solibacter usitatus Ellin6076 Susi_Aa 639633060 234267 639686479 fig|234267.9.peg.6617 - Acid_6982 cd04258 cd04912/cd04917 1 0 0 2 Yes No No 639680070 639686527 absent
13 Gene Neighborhood alpha Eukaryota Streptophyta rosids Brassicales Brassicaceae Arabidopsis Arabidopsis thaliana Columbia Atha_a 639560100 3702 639579615 fig|3702.1.peg.23535 - AT5G14060 cd04244 cd04933/cd04918 1 0 0 5 Yes Yes No 639580575 absent
13 Gene Neighborhood alpha Eukaryota Streptophyta rosids Brassicales Brassicaceae Arabidopsis Arabidopsis thaliana Columbia Atha_c 639560100 3702 639571187 fig|3702.1.peg.12136 - AT3G02020 cd04244 cd04933/cd04918 1 0 0 5 Yes Yes No 639580575 absent
13 Gene Neighborhood alpha Eukaryota Streptophyta rosids Brassicales Brassicaceae Arabidopsis Arabidopsis thaliana Columbia Atha_b 639560100 3702 639579531 fig|3702.1.peg.23445 - AT5G13280 cd04244 cd04933/cd04918 1 0 0 2cdq 5 Yes Yes No 639580575 absent
14 Gene Neighborhood alpha Archaea Euryarchaeota Archaeoglobi Archaeoglobales Archaeoglobaceae Archaeoglobus Archaeoglobus fulgidus DSM 4304 Aful_Aa 638154502 224325 638157227 fig|224325.1.peg.693 - AF0700 cd04244 cd04921/cd04924 1 0 0 1 Yes No Yes 638157474 absent
14 Gene Neighborhood alpha Archaea Euryarchaeota environmental sample unclassified unclassified uncultured uncultured methanogenic archaeon RC-I Umet_Aa 640427153 351160 640535568 - - RCIX1827 cd04244 cd04921/cd04924 1 0 0 1 Yes No Yes 640537168 absent
14 Gene Neighborhood alpha Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosaetaceae Methanosaeta Methanosaeta thermophila PT Mthe-2_Aa 639633038 349307 639700270 fig|349307.9.peg.1229 - Mthe_1253 cd04244 cd04921/cd04924 1 0 0 1 Yes No Yes 639699864 absent
14 Gene Neighborhood alpha Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanococcoides Methanococcoides burtonii DSM 6242 Mbur_Aa 637000161 259564 637959721 fig|259564.8.peg.1892 - Mbur_1980 cd04244 cd04921/cd04924 1 0 0 1 Yes No Yes 637958859 absent
14 Gene Neighborhood alpha Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina acetivorans C2A Mace_Aa 638154508 188937 638174861 fig|188937.1.peg.131 - MA0131 cd04244 cd04921/cd04924 1 0 0 1 Yes No Yes 638177380 absent
14 Gene Neighborhood alpha Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina barkeri fusaro Mbar_Aa 637000162 269797 637699748 fig|269797.3.peg.335 fig|2208.1.peg.3811, Methanosarcina barkeri
Gene Neighborhood Mbar_A086 cd04244 cd04921/cd04924 1 0 0 1 Yes No Yes 637700779 absent
14 Gene Neighborhood alpha Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Go1 Mmaz_Aa 638154509 192952 638165942 fig|192952.1.peg.1417 - MM1417 cd04244 cd04921/cd04924 1 0 0 1 Yes No Yes 638167288 absent
15 Gene Neighborhood alpha Archaea Euryarchaeota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanoculleus Methanoculleus marisnigri JR1 Mmar-6_Aa 640069318 368407 640114892 fig|368407.6.peg.221 - Memar_0222 cd04244 cd04921/cd04924 1 0 0 1 Yes No Yes 640115657 absent
15 Gene Neighborhood alpha Archaea Euryarchaeota Methanomicrobia Methanomicrobiales Methanospirillaceae Methanospirillum Methanospirillum hungatei JF-1 Mhun_Aa 637000164 323259 637898663 fig|323259.5.peg.3196 - Mhun_3054 cd04244 cd04921/cd04924 1 0 0 1 Yes No Yes 637897902 absent
16 Gene Neighborhood alpha Archaea Euryarchaeota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococc Methanocaldococcus jannaschii DSM 2661 Mjan_Aa 638154505 243232 638201890 fig|243232.1.peg.587 - MJ0571 cd04244 cd04921/cd04892 1 0 0 2hmf/3c1m/3c1n 1 Yes No Yes 638203005 absent
16 Gene Neighborhood alpha Archaea Euryarchaeota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus maripaludis C5 Mmar-5_Aa 640069316 402880 640166081 fig|402880.8.peg.574 fig|267377.1.peg.1017, Methanococcus maripaludis S2
fig|426368.9.peg.267, Methanococcus maripaludis C7
fig|444158.3.peg.1627, Methanococcus maripaludis C6
Gene Neighborhood MmarC5_0577 cd04244 cd04921/cd04892 1 0 0 1 Yes No Yes 640167220 absent
17 Gene Neighborhood alpha Bacteria Deinococcus-Th Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis DSM 11300 Dgeo_Aa 641228488 319795 641230142 fig|68909.1.peg.2114 - Dgeo_1127 cd04244 cd00000cd04892 1 0 0 1 Yes Yes No 641229624 absent
17 Gene Neighborhood alpha Bacteria Deinococcus-Th Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiodurans R1 Drad_Aa 637000092 243230 637035689 fig|243230.1.peg.1547 - DR1365 cd04244 cd00000cd04892 1 0 0 1 Yes Yes No 637035602 absent
18 Gene Neighborhood alpha Archaea Euryarchaeota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus abyssi GE5 Paby_Aa 638154514 272844 638200418 fig|272844.1.peg.1088 - PAB1674 cd04234 1 0 0 2 Yes No No 638200276 absent
18 Gene Neighborhood alpha Archaea Euryarchaeota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus abyssi GE5 Paby_Ab 638154514 272844 638200417 fig|272844.1.peg.1087 - PAB1675 cd04234 1 0 0 2 Yes No No 638200276 absent
18 Gene Neighborhood alpha Archaea Euryarchaeota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus furiosus DSM 3638 Pfur_Aa 638154515 186497 638173617 fig|186497.1.peg.1090 - PF1053 cd04234 1 0 0 2 Yes No No 638173671 absent
18 Gene Neighborhood alpha Archaea Euryarchaeota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus furiosus DSM 3638 Pfur_Ab 638154515 186497 638173616 fig|186497.1.peg.1089 - PF1052 cd04234 1 0 0 2 Yes No No 638173671 absent
18 Gene Neighborhood alpha Archaea Euryarchaeota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus horikoshii OT3 Phor_Aa 638154516 70601 638186593 fig|70601.1.peg.1060 - PH1086 cd04234 1 0 0 2 Yes No No 638186581 absent
18 Gene Neighborhood alpha Archaea Euryarchaeota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus horikoshii OT3 Phor_Ab 638154516 70601 638186340 fig|70601.1.peg.838 - PH0858 cd04234 1 0 0 2 Yes No No 638186581 absent
18 Gene Neighborhood alpha Archaea Euryarchaeota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus kodakaraensis KOD1 Tkod_Aa 638154520 69014 638207620 fig|69014.3.peg.1316 - TK1445 cd04234 1 0 0 1 Yes No No 638207810 absent
19 Gene Neighborhood alpha Archaea Crenarchaeota Thermoprotei Desulfurococcales Desulfurococcaceae Aeropyrum Aeropyrum pernix K1 Aper_Aa 638154501 272557 638188901 fig|272557.1.peg.846 - APE1140 cd04244 cd04921 1 0 0 1 Yes No No 638188905 absent
19 Gene Neighborhood alpha Archaea Euryarchaeota Methanopyri Methanopyrales Methanopyraceae Methanopyrus Methanopyrus kandleri AV19 Mkan_Aa 638154507 190192 638169593 fig|190192.1.peg.1531 - MK1535 cd04243 cd04921 1 0 0 2 Yes No Yes 638169614 absent
20 Gene Neighborhood alpha Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae Metallosphaera Metallosphaera sedula DSM 5348 Msed_Aa 640427120 399549 640507593 fig|399549.6.peg.1677 - Msed_1699 cd04243 cd04921 0 0 1 1 Yes No No 640507891 absent
20 Gene Neighborhood alpha Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus acidocaldarius DSM 639 Saci_Aa 638154517 330779 638198328 fig|330779.3.peg.331 - Saci_1412 cd04243 cd04921/cd04892 0 0 1 1 Yes No No 638198547 absent
20 Gene Neighborhood alpha Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus solfataricus P2 Ssol_Aa 638154518 273057 638162108 fig|273057.1.peg.796 - SSO0876 cd04243 cd04921 0 0 1 1 Yes No No 638161878 absent
20 Gene Neighborhood alpha Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus tokodaii 7 Stok_Aa 638154519 273063 638193573 fig|273063.1.peg.1341 - ST1241 cd04243 cd04921/cd04892 0 0 1 1 Yes No No 638193904 absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Deltaproteobacteria Bdellovibrionales Bdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus HD100 Bbac_Ab 637000030 264462 637480837 fig|264462.1.peg.121 - Bd0134 cd04258 cd04932/cd04917 1 0 0 2 No No No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Aeromonadales Aeromonadaceae Aeromonas Aeromonas hydrophila hydrophila ATCC 7966 Ahyd_Ab 639633004 380703 639715145 fig|380703.5.peg.2452 - AHA_2570 cd04258 cd04932/cd04917 1 0 0 4 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Aeromonadales Aeromonadaceae Aeromonas Aeromonas salmonicida salmonicida A449 Asal_Ab 641522605 382245 640465501 fig|382245.6.peg.2406 - ASA_2578 cd04258 cd04932/cd04917 1 0 0 4 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Colwelliaceae Colwellia Colwellia psychrerythraea 34H Cpsy_Aa 637000081 167879 637284466 fig|167879.3.peg.1920 - CPS_2004 cd04258 cd04932/cd04917 1 0 0 3 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Idiomarinaceae Idiomarina Idiomarina loihiensis L2TR Iloi_Aa 637000136 283942 637605979 fig|283942.3.peg.1805 - IL1439 cd04258 cd04932/cd04917 1 0 0 2 Yes No No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Pseudoalteromonadaceae Pseudoalteromona Pseudoalteromonas atlantica T6c Patl_Aa 637000216 342610 638056456 fig|342610.3.peg.2345 - Patl_3425 cd04258 cd04932/cd04917 1 0 0 2 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Pseudoalteromonadaceae Pseudoalteromona Pseudoalteromonas haloplanktis TAC125 Phal_Ab 637000217 326442 637734159 fig|326442.4.peg.1917 - PSHAa1250 cd04258 cd04932/cd04917 1 0 0 4 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella amazonensis SB2B Sama_Ab 639633057 326297 639779938 fig|326297.7.peg.566 - Sama_0603 cd04258 cd04932/cd04917 1 0 0 4 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella baltica OS155 Sbal_Ab 640069330 325240 640118007 fig|325240.9.peg.1016 fig|399599.3.peg.3919, Shewanella baltica OS195
fig|402882.10.peg.3952, Shewanella baltica OS185
Gene Neighborhood Sbal_0788 cd04258 cd04932/cd04917 1 0 0 4 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella denitrificans OS217 Sden_Aa 637000256 318161 637957033 fig|318161.14.peg.2891 - Sden_2982 cd04258 cd04932/cd04917 1 0 0 3 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella frigidimarina NCIMB 400 Sfri_Ab 637000257 318167 638133293 fig|318167.10.peg.510 - Sfri_0535 cd04258 cd04932/cd04917 1 0 0 3 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella loihica PV-4 Sloi_Aa 640069331 323850 640162312 fig|323850.3.peg.1388 - Shew_0779 cd04258 cd04932/cd04917 1 0 0 3 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella oneidensis MR-1 Sone_Ab 637000258 211586 637345738 fig|211586.1.peg.3619 - SO3986 cd04258 cd04932/cd04917 1 0 0 4 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella putrefaciens CN-32 Sput_Ab 640427141 319224 640497805 fig|319224.13.peg.616 - Sputcn32_0680 cd04258 cd04932/cd04917 1 0 0 4 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella sp. ANA-3 SHEW-3b 639633058 94122 639725187 fig|94122.5.peg.792 fig|60480.16.peg.625, Shewanella sp. MR-4
fig|60481.10.peg.3171, Shewanella sp. MR-7
fig|351745.7.peg.3231, Shewanella sp. W3-18-1
Gene Neighborhood Shewana3_0652 cd04258 cd04932/cd04917 1 0 0 4 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Enterobacter Enterobacter sp. 638 ENTE-2a 640427113 399742 640490395 fig|399742.4.peg.310 - Ent638_0229 cd04258 cd04932/cd04917 1 0 0 3 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Erwinia Erwinia carotovora atroseptica SCRI1043 Patr_Aa 637000102 218491 637380470 fig|218491.3.peg.2695 - ECA3981 cd04258 cd04932/cd04917 1 0 0 3 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli K12 Ecol_Aa 637000106 83333 637017348 fig|83333.1.peg.3933 fig|316407.3.peg.3861, Escherichia coli W3110
fig|344610.3.peg.1286, Escherichia coli 53638
fig|481805.3.peg.4309, Escherichia coli ATCC 8739
fig|83334.1.peg.4983, Escherichia coli O157:H7
fig|199310.1.peg.4885, Escherichia coli CFT073
fig|216592.1.peg.2314, Escherichia coli 042
fig|216593.1.peg.4005, Escherichia coli E2348/69
fig|405955.9.peg.3794, Escherichia coli APEC O1
fig|340197.3.peg.2023, Escherichia coli F11
fig|331111.3.peg.2172, Escherichia coli E24377A
fig|331112.3.peg.3975, Escherichia coli HS
fig|340184.3.peg.2540, Escherichia coli B7A
fig|340185.3.peg.1307, Escherichia coli E22
fig|340186.3.peg.943, Escherichia coli E110019
fig|344601.3.peg.992, Escherichia coli B171
Gene Neighborhood b4024 cd04258 cd04932/cd04917 1 0 0 1ohi/2j0w/2j0x/ 3 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Photorhabdus Photorhabdus luminescens laumondii TTO1 Plum_Aa 637000207 243265 637466099 fig|243265.1.peg.4176 - plu4380 cd04258 cd04932/cd04917 1 0 0 3 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica enterica sv Typhi Ty2 Sent_Na 637000253 209261 637407781 fig|209261.1.peg.3840 fig|220341.1.peg.3908, Salmonella enterica subsp. enterica serovar Typhi str. CT18
fig|295319.3.peg.4005, Salmonella enterica subsp. enterica serovar Paratypi A str. ATCC 9150
fig|594.1.peg.585, Salmonella enterica subsp. enterica serovar Gallinarum
Gene Neighborhood t4126 cd04258 cd04932/cd04917 1 0 0 3 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Salmonella Salmonella typhimurium LT2 Styp_Aa 637000255 99287 637214913 fig|99287.1.peg.4058 - STM4220 cd04258 cd04932/cd04917 1 0 0 3 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Shigella Shigella boydii Sb227 Sboy_Aa 637000261 300268 637809672 - fig|344609.3.peg.799, Shigella boydii BS512
SBO_4052 cd04258 cd04932/cd04917 1 0 0 2 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Shigella Shigella dysenteriae Sd197 Sdys_Aa 640427142 300267 640436423 - fig|216598.1.peg.1703, Shigella dysenteriae M131649
SDY_4227 cd04258 cd04932/cd04917 1 0 0 3 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Shigella Shigella flexneri 2a 2457T Sfle_Aa 637000263 198215 637425313 fig|198215.1.peg.3044 fig|198214.1.peg.3935, Shigella flexneri 2a str. 301
Gene Neighborhood S3550 cd04258 cd04932/cd04917 1 0 0 3 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Shigella Shigella sonnei Ss046 Sson_Aa 640427143 300269 640431867 fig|300269.3.peg.3287 fig|216599.1.peg.3470, Shigella sonnei 53G
Gene Neighborhood SSON_4202 cd04258 cd04932/cd04917 1 0 0 3 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Sodalis Sodalis glossinidius morsitans Sglo_Aa 637000270 343509 637854125 fig|343509.6.peg.4727 - SG2147 cd04258 cd04932/cd04917 1 0 0 2 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis CO92 Ypes_Aa 637000351 214092 637202683 fig|214092.1.peg.3686 fig|187410.1.peg.21, Yersinia pestis KIM
fig|229193.1.peg.2971, Yersinia pestis biovar Medievalis str. 91001
fig|349746.3.peg.3272, Yersinia pestis Angola
fig|360102.4.peg.249, Yersinia pestis Antiqua
fig|377628.5.peg.159, Yersinia pestis Nepal516
fig|386656.4.peg.359, Yersinia pestis Pestoides F
Gene Neighborhood YPO3719 cd04258 cd04932/cd04917 1 0 0 3 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Yersinia Yersinia pseudotuberculosis IP 32953 Ypse_Aa 637000355 273123 637535257 fig|273123.1.peg.3714 fig|349747.3.peg.2241, Yersinia pseudotuberculosis IP 31758
fig|502800.3.peg.363, Yersinia pseudotuberculosis YPIII
Gene Neighborhood YPTB3650 cd04258 cd04932/cd04917 1 0 0 3 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Pasteurellales Pasteurellaceae Haemophilus Haemophilus ducreyi 35000HP Hduc_Aa 637000124 233412 637129370 fig|233412.1.peg.1164 - HD1375 cd04258 cd04932/cd04917 1 0 0 1 No No No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Pasteurellales Pasteurellaceae Mannheimia Mannheimia succiniciproducens MBEL55E Msuc_Aa 637000156 221988 637551140 fig|221988.1.peg.1517 - MS1613 cd04258 cd04932/cd04917 1 0 0 2 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Pasteurellales Pasteurellaceae Pasteurella Pasteurella multocida multocida Pm70 Pmul_Aa 637000203 272843 637070551 fig|272843.1.peg.937 - PM0937 cd04258 cd04932/cd04917 1 0 0 2 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus pleuropneumoniae L20 Aple_Aa 640069302 416269 640122376 fig|416269.5.peg.680 fig|228399.1.peg.1687, Actinobacillus pleuropneumoniae serovar 1 str. 4074
Gene Neighborhood APL_0710 cd04258 cd04932/cd04917 1 0 0 2 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-upper Thiotrichales Francisellaceae Francisella Francisella tularensis novicida U112 Ftul_Aa 639633024 401614 639753766 fig|401614.5.peg.1694 - FTN_1730 cd04258 cd04932/cd04917 1 0 0 2 Yes No No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Photobacterium Photobacterium profundum SS9 Ppro_Bc 637000206 298386 637587992 fig|298386.1.peg.5506 fig|314280.3.peg.3571, Photobacterium profundum 3TCK
Gene Neighborhood PBPRA3293 cd04258 cd04932/cd04917 1 0 0 5 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio cholerae O1 biovar eltor str. N16961 Vcho_Fb 637000333 243277 637046846 fig|243277.1.peg.386 fig|345072.3.peg.2981, Vibrio cholerae MO10
fig|345073.6.peg.3259, Vibrio cholerae O395
fig|345076.3.peg.2349, Vibrio cholerae V52
fig|412614.3.peg.1693, Vibrio cholerae 2740-80
fig|412967.3.peg.2101, Vibrio cholerae MAK 757
fig|417399.3.peg.1317, Vibrio cholerae NCTC8457
fig|417400.3.peg.1340, Vibrio cholerae B33
fig|412966.3.peg.2123, Vibrio cholerae 1587
fig|404974.3.peg.2203, Vibrio cholerae AM-19226
fig|412883.3.peg.1773, Vibrio cholerae MZO-3
fig|88888881.3.peg.2362, Vibrio cholerae NRT36s
Gene Neighborhood VC0391 cd04258 cd04932/cd04917 1 0 0 5 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio fischeri ES114 Vfis_Ab 637000334 312309 637634971 fig|312309.3.peg.338 fig|388396.7.peg.665, Vibrio fischeri MJ11
Gene Neighborhood VF0338 cd04258 cd04932/cd04917 1 0 0 5 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus RIMD 2210633 Vpar_Ab 637000335 223926 637399733 fig|223926.1.peg.4936 fig|223926.1.peg.2716, Vibrio parahaemolyticus RIMD 2210633
Gene Neighborhood VP2715 cd04258 cd04932/cd04917 1 0 0 5 Yes Yes No absent
21 Gene Neighborhood alpha Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio vulnificus CMCP6 Vvul_Ac 637000336 216895 637361784 fig|216895.1.peg.1301 fig|196600.1.peg.3026, Vibrio vulnificus YJ016
Gene Neighborhood VV11424 cd04258 cd04932/cd04917 1 0 0 4 Yes Yes No absent
22 Gene Neighborhood alpha Bacteria Chlamydiae Chlamydiae Chlamydiales Chlamydiaceae Chlamydia Chlamydia muridarum Nigg Cmur_Aa 637000062 243161 637061448 fig|243161.4.peg.689 - TC0641 cd04243 1 0 0 1 No No No absent
22 Gene Neighborhood alpha Bacteria Chlamydiae Chlamydiae Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis D/UW-3/CX Ctra_Aa 637000064 272561 637004718 fig|272561.1.peg.369 fig|315277.3.peg.275, Chlamydia trachomatis A/HAR-13
Gene Neighborhood CT362 cd04243 1 0 0 1 No No No absent
22 Gene Neighborhood alpha Bacteria Chlamydiae Chlamydiae Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila abortus S26/3 Cabo_Aa 637000065 218497 637382531 fig|218497.4.peg.644 - CAB678 cd04243 1 0 0 1 No No No absent
22 Gene Neighborhood alpha Bacteria Chlamydiae Chlamydiae Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila caviae GPIC Ccav_Aa 637000066 227941 637251003 fig|227941.1.peg.702 - CCA00713 cd04243 1 0 0 1 No No No absent
22 Gene Neighborhood alpha Bacteria Chlamydiae Chlamydiae Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila felis Fe/C-56 Cfel_Aa 637000067 264202 637908716 fig|264202.3.peg.303 - CF0305 cd04243 1 0 0 1 No No No absent
22 Gene Neighborhood alpha Bacteria Chlamydiae Chlamydiae Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila pneumoniae CWL029 Cpne_Aa 637000069 115713 637024573 fig|115713.1.peg.1030 fig|138677.1.peg.1045, Chlamydophila pneumoniae J138
fig|182082.1.peg.1086, Chlamydophila pneumoniae TW-183
fig|115711.7.peg.774, Chlamydophila pneumoniae AR39
Gene Neighborhood CPn1049 cd04243 1 0 0 1 No No No absent
23 Gene Neighborhood alpha Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Haloarcula Haloarcula marismortui ATCC 43049 Hmar_Aa 638154503 272569 638184246 fig|272569.1.peg.2429 - rrnAC2663 cd04234 1 0 0 1 Yes No No 638184014 absent
23 Gene Neighborhood alpha Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium sp. NRC-1 HALO-10a 638154504 64091 638160967 fig|64091.1.peg.2017 - VNG2374G cd04234 cd04868/cd04921 1 0 0 1 Yes No No 638161197 absent
23 Gene Neighborhood alpha Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Haloquadratum Haloquadratum walsbyi DSM 16790 Hwal_Aa 637000129 362976 638050303 fig|362976.6.peg.5 - HQ1005A cd04234 cd04919/cd04923 1 0 0 1 Yes No No 638052631 absent
23 Gene Neighborhood alpha Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Natronomonas Natronomonas pharaonis DSM 2160 Npha_Aa 637000187 348780 637720811 fig|348780.3.peg.329 - NP0550A cd04234 1 0 0 1 Yes No No 637720680 absent
23 Gene Neighborhood alpha Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibact Methanobrevibacter smithii ATCC 35061 Msmi_Aa 640427121 420247 640592631 fig|420247.6.peg.811 - Msm_0832 cd04234 cd04892/cd04921 1 0 0 1 Yes No Yes 640591937 absent
23 Gene Neighborhood alpha Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera stadtmanae DSM 3091 Msta_Aa 637000163 339860 637845997 fig|339860.6.peg.105 - Msp_0107 cd04234 cd04916/cd04872 1 0 0 1 Yes No Yes 637846377 absent
23 Gene Neighborhood alpha Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanothermobac Methanothermobacter thermautotrophicus str. Delta H Mthe-5_Aa 638154510 187420 638155329 fig|187420.1.peg.796 - MTH802 cd04234 cd04892/cd04921 1 0 0 1 Yes No Yes 638155768 638154931 absent
24 Gene Neighborhood beta Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis Ames Bant_Ab 637000014 198094 637304152 fig|198094.1.peg.3608 fig|205919.3.peg.208, Bacillus anthracis str. Kruger B
fig|260799.1.peg.3611, Bacillus anthracis str. Sterne
fig|261591.3.peg.5091, Bacillus anthracis str. Vollum
fig|261594.1.peg.3914, Bacillus anthracis str. 'Ames Ancestor'
fig|280354.3.peg.1267, Bacillus anthracis str. CNEVA-9066
fig|280355.3.peg.1165, Bacillus anthracis str. A1055
fig|280477.3.peg.2625, Bacillus anthracis str. Australia 94
Gene Neighborhood BA3936 cd04260 cd04914/cd04937 1 0 0 2 Yes Yes No 637302346/637305803 637302942 absent
24 Gene Neighborhood beta Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus ATCC 10987 Bcer_Ab 637000016 222523 637280638 fig|222523.1.peg.3806 fig|226900.1.peg.3632, Bacillus cereus ATCC 14579
fig|288681.3.peg.1667, Bacillus cereus ZK
fig|315749.4.peg.2517, Bacillus cereus subsp. cytotoxis NVH 391-98
fig|269801.1.peg.4532, Bacillus cereus G9241
Gene Neighborhood BCE_3837 cd04260 cd04914/cd04937 1 0 0 2 Yes Yes No 637278870/637282357 637279436 absent
24 Gene Neighborhood beta Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus clausii KSM-K16 Bcla_Aa 637000019 66692 637620571 fig|66692.3.peg.2519 - ABC2215 cd04260 cd04914/cd04937 1 0 0 2 Yes Yes No 637621311 637619929 637618323 absent
24 Gene Neighborhood beta Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus halodurans C-125 Bhal-1_Ab 637000020 272558 637059102 fig|272558.1.peg.2400 - BH2400 cd04260 cd04914/cd04937 1 0 0 3 Yes Yes No 637060139 637057951 637058439 absent
24 Gene Neighborhood beta Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus licheniformis ATCC 14580 (Goettingen) Blic_Aa 639279303 279010 639311067 fig|279010.5.peg.2605 - BLi01901 cd04260 cd04914/cd04937 1 0 0 3 Yes Yes No 639312540 absent
24 Gene Neighborhood beta Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus subtilis 168 Bsub_Ab 637000022 224308 637031834 fig|224308.1.peg.1679 - BSU16760 cd04260 cd04914/cd04937 1 0 0 3 Yes Yes No 637033411 absent
24 Gene Neighborhood beta Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus thuringiensis sv konkukian 97-27 Bthu_Ab 637000023 281309 637514959 fig|281309.3.peg.3759 fig|412694.5.peg.3292, Bacillus thuringiensis str. Al Hakam
Gene Neighborhood BT9727_3541 cd04260 cd04914/cd04937 1 0 0 2 Yes Yes No 637513229/637516521 637513812 absent
24 Gene Neighborhood beta Bacteria Firmicutes Bacilli Bacillales Bacillaceae Geobacillus Geobacillus kaustophilus HTA426 Gkau_Aa 637000118 235909 637598051 fig|235909.3.peg.125 - GK1276 cd04260 cd04914/cd04937 1 0 0 2 Yes Yes No 637599776 absent
24 Gene Neighborhood beta Bacteria Firmicutes Bacilli Bacillales Bacillaceae Geobacillus Geobacillus thermodenitrificans NG80-2 Gthe_Aa 640069312 420246 640191970 fig|420246.5.peg.1098 - GTNG_1130 cd04260 cd04914/cd04937 1 0 0 1 Yes Yes No 640193765 640193105 absent
24 Gene Neighborhood beta Bacteria Firmicutes Bacilli Bacillales Bacillaceae Oceanobacillus Oceanobacillus iheyensis HTE831 Oihe_Aa 637000201 221109 637325259 fig|221109.1.peg.1613 - OB1611 cd04260 cd04914/cd04937 1 0 0 2 Yes No No 637324081 absent
24 Gene Neighborhood beta Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria innocua Clip11262 Linn_Aa 637000152 272626 637224202 fig|272626.1.peg.1464 - lin1475 cd04260 cd04914/cd04937 1 0 0 3 Yes Yes No 637225465 absent
24 Gene Neighborhood beta Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes 4b F2365 Lmon_Aa 637000154 265669 637165210 fig|265669.1.peg.1440 fig|393117.3.peg.1335, Listeria monocytogenes FSL J1-194
fig|169963.1.peg.1428, Listeria monocytogenes EGD-e
fig|267409.1.peg.737, Listeria monocytogenes str. 1/2a F6854
fig|267410.1.peg.1318, Listeria monocytogenes str. 4b H7858
fig|393123.3.peg.1107, Listeria monocytogenes FSL N1-017
fig|393124.3.peg.1068, Listeria monocytogenes FSL N3-165
fig|393125.3.peg.1764, Listeria monocytogenes FSL R2-503
fig|393128.3.peg.1233, Listeria monocytogenes F6900
fig|393130.3.peg.1179, Listeria monocytogenes J0161
fig|393131.3.peg.1189, Listeria monocytogenes J2818
fig|393133.3.peg.1363, Listeria monocytogenes 10403S
fig|401650.3.peg.1036, Listeria monocytogenes Aureli 1997
Gene Neighborhood LMOf2365_1455 cd04260 cd04914/cd04937 1 0 0 3 Yes Yes No 637166319 absent
24 Gene Neighborhood beta Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria welshimeri sv 6b SLCC5334 Lwel_Aa 639633035 386043 639706342 fig|386043.6.peg.1408 - lwe1453 cd04260 cd04914/cd04937 1 0 0 3 Yes Yes No 639707439 absent
24 Gene Neighborhood beta Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus plantarum WCFS1 Lpla_Aa 637000141 220668 637388264 fig|220668.1.peg.822 - lp_0979 cd04260 cd04914/cd04937 1 0 0 2 Yes No No 637387915 637389605 absent
24 Gene Neighborhood beta Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus salivarius salivarius UCC118 Lsal_Aa 637000143 362948 637929164 - - LSL_1058 cd04260 cd04914/cd04937 1 0 0 1 Yes No No 637929636 absent
24 Gene Neighborhood beta Bacteria Firmicutes Clostridia Clostridiales unclassified Symbiobacterium Symbiobacterium thermophilum IAM 14863 Sthe-17_Aa 637000306 292459 637538069 fig|292459.1.peg.1489 - STH1548 cd04260 cd04914/cd04937 1 0 0 2 Yes No No 637539275 absent
24 Gene Neighborhood beta Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium acetobutylicum ATCC 824 Cace_Aa 637000076 272562 637177472 fig|272562.1.peg.1964 - CAC1810 cd04260 cd04914/cd04937 1 0 0 2 Yes No No 637176669 absent
24 Gene Neighborhood beta Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium botulinum A ATCC 3502 Cbot_Bb 640427109 413999 640574001 fig|413999.4.peg.2295 fig|441770.4.peg.2117, Clostridium botulinum A str. ATCC 19397
fig|441771.4.peg.2099, Clostridium botulinum A str. Hall
Gene Neighborhood CBO2410 cd04260 cd04914/cd04937 1 0 0 3 Yes No No 640573238 640573473 absent
24 Gene Neighborhood beta Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium difficile 630 Cdif_Ab 640069308 272563 640157120 fig|1496.1.peg.3410 - CD1322 cd04260 cd04914/cd04937 1 0 0 2 Yes No No 640156958/640157389 absent
24 Gene Neighborhood beta Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium novyi NT Cnov_Aa 639633021 386415 639732223 - - NT01CX_2128 cd04260 cd04914/cd04937 1 0 0 2 Yes No No 639730992 absent
24 Gene Neighborhood beta Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium perfringens 13 Cper_Aa 637000079 195102 637253034 fig|195102.1.peg.1741 - CPE1678 cd04260 cd04914/cd04937 1 0 0 1 No No No absent
24 Gene Neighborhood beta Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium tetani E88 Ctet_Aa 637000080 212717 637386099 fig|212717.1.peg.1134 - CTC01282 cd04260 cd04914/cd04937 1 0 0 2 Yes No No 637387084 637385729 absent
24 Gene Neighborhood beta Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Carboxydothermus Carboxydothermus hydrogenoformans Z-2901 Chyd_Ab 637000060 246194 637753902 fig|246194.3.peg.1206 - CHY_1155 cd04260 cd04914/cd04937 1 0 0 2 Yes No No 637754652 absent
24 Gene Neighborhood beta Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Desulfotomaculum Desulfotomaculum reducens MI-1 Dred_Aa 640069310 349161 640181108 fig|349161.4.peg.1907 - Dred_1940 cd04260 cd04914/cd04937 1 0 0 2 Yes No No 640180334 absent
24 Gene Neighborhood beta Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Pelotomaculum Pelotomaculum thermopropionicum SI Pthe_Ab 640427128 370438 640527253 - - PTH_1287 cd04260 cd04914/cd04937 1 0 0 2 Yes No No 640527573 absent
24 Gene Neighborhood beta Bacteria Firmicutes Clostridia Thermoanaerobacter Thermoanaerobacteriace Moorella Moorella thermoacetica ATCC 39073 Mthe-3_Ab 637000167 264732 637828995 fig|264732.9.peg.1050 - Moth_1067 cd04260 cd04914/cd04937 1 0 0 2 Yes No No 637829243 absent
24 Gene Neighborhood beta Bacteria Firmicutes Clostridia Thermoanaerobacter Thermoanaerobacteriace Thermoanaerobact Thermoanaerobacter tengcongensis MB4 Tten_Aa 637000318 273068 637262918 fig|273068.3.peg.1347 - TTE1382 cd04260 cd04914/cd04937 1 0 0 1 Yes No No 637264088 637263645 absent
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Acidothermaceae Acidothermus Acidothermus cellulolyticus 11B Acel_Aa 639633001 351607 639730806 fig|351607.5.peg.2008 - Acel_2012 cd04261 cd04913/cd04936 0 1 0 1 Yes No No 639729398 MEA
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Micrococcaceae Arthrobacter Arthrobacter sp. FB24 ARTH-1a 639633006 290399 639688349 - - Arth_0552 cd04261 cd04913/cd04936 1 0 0 1 Yes No No 639690442 639691384 LEQ
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium diphtheriae NCTC 13129 Cdip_Aa 637000082 257309 637117498 fig|257309.1.peg.256 - DIP0277 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637118245 VEE
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium efficiens YS-314 Ceff_Aa 637000083 196164 637351074 fig|196164.1.peg.220 - CE0220 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637352158 MEE
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium glutamicum ATCC 13032 (Kitasato) Cglu_Aa 639279307 196627 639301219 fig|196627.4.peg.286 - NCgl0247 cd04261 cd04913/cd04936 0 1 0 2dtj 1 Yes Yes No 639315697/639302125 VEE
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium jeikeium K411 Cjei_Aa 637000085 306537 637665819 fig|306537.3.peg.766 - jk1998 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637665163 MEE
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Microbacteriaceae Clavibacter Clavibacter michiganensis michiganensis NCPPB 382 Cmic_Aa 640427108 443906 640540204 fig|443906.9.peg.952 - CMM_0902 cd04261 cd04913/cd04936 1 0 0 1 Yes No No 640540464 VEE
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Frankiaceae Frankia Frankia alni ACN14a Faln_Ab 637000115 326424 638097357 - - FRAAL0605 cd04261 cd04913/cd04936 1 0 0 2 Yes No No 638102598 VEQ
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Frankiaceae Frankia Frankia sp. CcI3 FRAN-2b 637000116 106370 637877590 fig|106370.11.peg.255 fig|298653.4.peg.6441, Frankia sp. EAN1pec
Gene Neighborhood Francci3_0262 cd04261 cd04913/cd04936 1 0 0 2 Yes No No 637881051 VEQ
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Microbacteriaceae Leifsonia Leifsonia xyli xyli CTCB07 Lxyl_Aa 637000149 281090 637525335 fig|281090.3.peg.1388 - Lxx03450 cd04261 cd04913/cd04936 1 0 0 1 Yes No No 637525599 VEE
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Corynebacteriaceae Mycobacterium Mycobacterium avium paratuberculosis K-10 Mavi_Ba 637000168 262316 637133255 fig|262316.1.peg.311 - MAP0311c cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637135439 MED
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Corynebacteriaceae Mycobacterium Mycobacterium bovis AF2122/97 Mbov_Aa 637000169 233413 637141082 fig|233413.1.peg.3704 fig|410289.13.peg.3731, Mycobacterium bovis BCG str. Pasteur 1173P2
Gene Neighborhood Mb3736c cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637138663 MED
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium gilvum PYR-GCK Mgil_Aa 640427122 350054 640455506 - - Mflv_1304 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 640456508 MED
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Corynebacteriaceae Mycobacterium Mycobacterium leprae TN Mlep_Aa 637000170 272631 637073099 fig|272631.1.peg.1383 - ML2323 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637072381 MED
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Corynebacteriaceae Mycobacterium Mycobacterium smegmatis MC2 155 Msme_Aa 639633041 246196 639744668 fig|246196.1.peg.6218 - MSMEG_6257 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 639743389 MED
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Corynebacteriaceae Mycobacterium Mycobacterium tuberculosis CDC1551 Mtub_Aa 637000172 83331 637098263 fig|83331.1.peg.3957 fig|336982.3.peg.3929, Mycobacterium tuberculosis F11
fig|419947.3.peg.3736, Mycobacterium tuberculosis H37Ra
fig|83332.1.peg.3712, Mycobacterium tuberculosis H37Rv
Gene Neighborhood MT3812 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637095655 MED
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium ulcerans Agy99 Mulc_Aa 639633043 362242 639762273 - - MUL_4297 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 639761992 MED
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium vanbaalenii PYR-1 Mvan_Aa 639633044 350058 639808976 fig|350058.5.peg.5419 - Mvan_5504 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 639807819 MED
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium sp. JLS MYCO-4a 640069320 164757 640142568 fig|164757.7.peg.5207 fig|164756.6.peg.4659, Mycobacterium sp. MCS
Gene Neighborhood Mjls_5257 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 640141194 MED
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Corynebacteriaceae Nocardia Nocardia farcinica IFM 10152 Nfar_Aa 637000198 247156 637572834 fig|247156.1.peg.389 - nfa3180 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637573580 LEK
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Nocardioidaceae Nocardioides Nocardioides sp. JS614 NOCA-3a 639633046 196162 639774935 fig|196162.6.peg.546 - Noca_0321 cd04261 cd04913/cd04936 0 1 0 1 Yes No No 639776344 MEQ
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Propionibacteriaceae Propionibacteriu Propionibacterium acnes KPA171202 Pacn_Aa 637000215 267747 637522885 fig|267747.1.peg.2090 - PPA2148 cd04261 cd04913/cd04936 1 0 0 1 Yes No No 637522007 MEE
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Corynebacteriaceae Rhodococcus Rhodococcus sp. RHA1 RHOD-5a 637000234 101510 638090873 - - RHA1_ro04291 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 638088075 VEE
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Streptomycetaceae Streptomyces Streptomyces avermitilis MA-4680 Save_Aa 637000304 227882 637207698 fig|227882.1.peg.4562 - SAV4559 cd04261 cd04913/cd04936 0 1 0 1 Yes No No 637206027 VEQ
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Streptomycetaceae Streptomyces Streptomyces coelicolor A3(2) Scoe_Aa 637000305 100226 637267867 fig|100226.1.peg.3572 - SCO3615 cd04261 cd04913/cd04936 0 1 0 1 Yes No No 637269630 637264648 VEQ
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Pseudonocardiaceae Saccharopolyspor Saccharopolyspora erythraea NRRL 2338 Sery_Aa 640069329 405948 640171032 - - SACE_0282 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 640176912 640172972 VEQ
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Streptomycetaceae Streptomyces Streptomyces griseus subsp. griseus NBRC 13350 Sgri_Aa 641522653 455632 641697696 - - SGR_3372 cd04261 cd04913/cd04936 0 1 0 2 Yes No No 641696496 VEH
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Micromonosporaceae Salinispora Salinispora tropica CNB-440 Stro_Aa 640427140 369723 640472498 fig|369723.3.peg.226 - Strop_0226 cd04261 cd04913/cd04936 0 1 0 1 Yes No No 640475906 VEQ
25 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Nocardiopsaceae Thermobifida Thermobifida fusca YX Tfus_Aa 637000319 269800 637683723 fig|269800.4.peg.70 - Tfu_0043 cd04261 cd04913/cd04936 0 1 0 1 Yes No No 637686139 MEQ
26 Gene Neighborhood beta Bacteria Thermotogae Thermotogae (class) Thermotogales Thermotogaceae Thermotoga Thermotoga maritima MSB8 Tmar_Ab 637000321 243274 637005837 fig|243274.1.peg.541 - TM0547 Hdh/Ask cd04261 cd04913/cd04936 1 0 0 2 Yes No No VEN
26 Gene Neighborhood beta Bacteria Thermotogae Thermotogae (class) Thermotogales Thermotogaceae Thermotoga Thermotoga petrophila RKU-1 Tpet_Ab 640427150 390874 640562876 fig|390874.10.peg.374 - Tpet_0373 Hdh/Ask cd04261 cd04913/cd04936 1 0 0 2 Yes No No VEN
27 Gene Neighborhood beta Bacteria Proteobacteria Deltaproteobacteria Bdellovibrionales Bdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus HD100 Bbac_Aa 637000030 264462 637481199 fig|264462.1.peg.481 - Bd0528 cd04261 0 1 0 2 No No No MFE
27 Gene Neighborhood beta Bacteria Proteobacteria Deltaproteobacteria Myxococcales Myxococcacea Anaeromyxobacter Anaeromyxobacter dehalogenans 2CP-C Adeh_Aa 637000007 290397 637865144 fig|290397.13.peg.3577 - Adeh_3589 cd04261 0 1 0 2 Yes No No 637863174 637862929 637865489 VVK
27 Gene Neighborhood beta Bacteria Proteobacteria Deltaproteobacteria Myxococcales Myxococcaceae Myxococcus Myxococcus xanthus DK 1622 Mxan_Aa 637000186 246197 638026217 fig|246197.19.peg.4360 - MXAN_4877 cd04246 0 1 0 4 Yes No No VLS
28 Gene Neighborhood beta Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium botulinum A ATCC 3502 Cbot_Ba 640427109 413999 640574950 fig|413999.4.peg.3200 fig|441770.4.peg.3162, Clostridium botulinum A str. ATCC 19397
fig|441771.4.peg.3044, Clostridium botulinum A str. Hall
Gene Neighborhood CBO3337 cd04261 cd04913/cd04936 0 1 0 3 Yes No No 640573238 640573473 MNM
28 Gene Neighborhood beta Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium difficile 630 Cdif_Aa 640069308 272563 640157892 fig|1496.1.peg.2725 - CD2054 cd04261 cd04913/cd04936 0 1 0 2 Yes No No 640156958/640157389 MKL
29 Gene Neighborhood beta Bacteria Thermotogae Thermotogae (class) Thermotogales Thermotogaceae Thermotoga Thermotoga maritima MSB8 Tmar_Aa 637000321 243274 637006812 fig|243274.1.peg.1502 - TM1518 cd04261 cd04891/cd04936 0 1 0 2 Yes No No MVV
29 Gene Neighborhood beta Bacteria Thermotogae Thermotogae (class) Thermotogales Thermotogaceae Thermotoga Thermotoga petrophila RKU-1 Tpet_Aa 640427150 390874 640563799 fig|390874.10.peg.1284 - Tpet_1274 cd04261 cd04891/cd04936 0 1 0 2 Yes No No MVV
30 Gene Neighborhood beta Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus aureus COL Saur_Aa 637000273 93062 637152180 fig|93062.4.peg.1609 fig|93061.3.peg.1313, Staphylococcus aureus subsp. aureus NCTC 8325
fig|158878.1.peg.1393, Staphylococcus aureus subsp. aureus Mu50
fig|158879.1.peg.1268, Staphylococcus aureus subsp. aureus N315
fig|196620.1.peg.1281, Staphylococcus aureus subsp. aureus MW2
fig|282458.1.peg.1325, Staphylococcus aureus subsp. aureus MRSA252
fig|282459.1.peg.1322, Staphylococcus aureus subsp. aureus MSSA476
fig|359786.3.peg.470, Staphylococcus aureus subsp. aureus JH9
fig|359787.3.peg.1262, Staphylococcus aureus subsp. aureus JH1
fig|367830.3.peg.1350, Staphylococcus aureus subsp. aureus USA300
fig|418127.4.peg.1283, Staphylococcus aureus subsp. aureus Mu3
fig|426430.6.peg.1265, Staphylococcus aureus subsp. aureus str. Newman
Gene Neighborhood SACOL1428 cd04261 cd04891/cd04923 1 0 0 2 Yes Yes No 637152115 MSN
30 Gene Neighborhood beta Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis RP62A Sepi_Aa 637000282 176279 637167618 fig|176279.3.peg.1042 fig|176280.1.peg.2503, Staphylococcus epidermidis ATCC 12228
Gene Neighborhood SERP0963 cd04261 cd04891/cd04923 1 0 0 2 Yes Yes No 637167553 MSK
30 Gene Neighborhood beta Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus haemolyticus JCSC1435 Shae_Aa 637000283 279808 637667503 fig|279808.3.peg.2248 - SH1518 cd04261 cd04891/cd04923 1 0 0 2 Yes Yes No 637667564 MSR
30 Gene Neighborhood beta Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus saprophyticus saprophyticus ATCC 15305 Ssap_Aa 637000284 342451 637696748 fig|342451.4.peg.694 - SSP1357 cd04261 cd04891/cd04923 1 0 0 2 Yes Yes No 637696829 MPQ
31 Gene Neighborhood beta Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Leptospiraceae Leptospira Leptospira borgpetersenii sv Hardjo-bovis JB197 Lbor_Ba 639633032 355277 639658115 - - LBJ_0538 cd04261 cd04913/cd04936 0 1 0 1 Yes No Yes 639660167 MEK
31 Gene Neighborhood beta Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Leptospiraceae Leptospira Leptospira interrogans sv Copenhageni Fiocruz L1-130 Lint_Aa 637000150 267671 637497785 fig|267671.1.peg.2825 fig|189518.1.peg.693, Leptospira interrogans serovar Lai str. 56601
Gene Neighborhood LIC12909 cd04261 cd04913/cd04936 0 1 0 1 Yes No Yes 637495490 MEK
32 Gene Neighborhood beta Bacteria Cyanobacteria Cyanobacteria Nostocales Nostocaceae Anabaena Anabaena variabilis ATCC 29413 Avar_Aa 637000006 240292 637718993 fig|240292.3.peg.4659 - Ava_3642 cd04261 cd04913/cd04936/cd04913/cd04936 1 0 0 1 Yes Yes No 637716112 absent
32 Gene Neighborhood beta Bacteria Cyanobacteria Gloeobacteria Gloeobacterales unclassified Gloeobacter Gloeobacter violaceus PCC 7421 Gvio_Aa 637000121 251221 637459166 fig|251221.1.peg.1774 - gll1774 cd04246 cd04913/cd04936/cd04913/cd04936 0 1 0 1 Yes No No 637461712 absent
32 Gene Neighborhood beta Bacteria Cyanobacteria Cyanobacteria Nostocales Nostocaceae Nostoc Nostoc sp. PCC 7120 NOST-3a 637000199 103690 637234036 fig|103690.1.peg.3951 - alr3644 cd04261 cd04913/cd04936/cd04913/cd04936 1 0 0 1 Yes Yes No 637234518 absent
32 Gene Neighborhood beta Bacteria Cyanobacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus MIT 9313 Pmar_Aa 637000211 74547 637446744 fig|74547.1.peg.73 fig|59919.1.peg.1644, Prochlorococcus marinus subsp. pastoris str. CCMP1986
fig|59920.3.peg.1008, Prochlorococcus marinus str. NATL2A
fig|74546.3.peg.1718, Prochlorococcus marinus str. MIT 9312
fig|93059.3.peg.1566, Prochlorococcus marinus str. MIT 9211
fig|167539.1.peg.1805, Prochlorococcus marinus subsp. marinus str. CCMP1375
Gene Neighborhood PMT0073 cd04261 cd04913/cd04936/cd04913/cd04936 1 0 0 1 Yes Yes No 637447837 absent
32 Gene Neighborhood beta Bacteria Cyanobacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus NATL2A Pmar_Ba 637000212 59920 637688122 fig|59920.3.peg.1008 fig|59919.1.peg.1644, Prochlorococcus marinus subsp. pastoris str. CCMP1986
fig|74546.3.peg.1718, Prochlorococcus marinus str. MIT 9312
fig|93059.3.peg.1566, Prochlorococcus marinus str. MIT 9211
fig|167539.1.peg.1805, Prochlorococcus marinus subsp. marinus str. CCMP1375
fig|74547.1.peg.73, Prochlorococcus marinus str. MIT 9313
Gene Neighborhood PMN2A_1246 cd04261 cd04913/cd04936/cd04913/cd04936 1 0 0 1 Yes Yes No 637687565 absent
32 Gene Neighborhood beta Bacteria Cyanobacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus pastoris CCMP1986 Pmar_Ca 637000214 59919 637450680 fig|59919.1.peg.1644 fig|59920.3.peg.1008, Prochlorococcus marinus str. NATL2A
fig|74546.3.peg.1718, Prochlorococcus marinus str. MIT 9312
fig|93059.3.peg.1566, Prochlorococcus marinus str. MIT 9211
fig|167539.1.peg.1805, Prochlorococcus marinus subsp. marinus str. CCMP1375
fig|74547.1.peg.73, Prochlorococcus marinus str. MIT 9313
Gene Neighborhood PMM1648 cd04261 cd04913/cd04936/cd04913/cd04936 1 0 0 1 Yes Yes No 637450066 absent
32 Gene Neighborhood beta Bacteria Cyanobacteria unclassified Chroococcales unclassified Synechococcus Synechococcus elongatus PCC 6301 Selo_Aa 637000307 269084 637616190 fig|269084.3.peg.2330 fig|1140.3.peg.397, Synechococcus elongatus PCC 7942
Gene Neighborhood syc0544_d cd04261 cd04913/cd04936/cd04913/cd04936 0 1 0 1 Yes No No 637617692 absent
32 Gene Neighborhood beta Bacteria Cyanobacteria unclassified Chroococcales unclassified Synechococcus Synechococcus sp. RCC307 SYNE-11a 640427148 316278 640544992 - - SynRCC307_0075 cd04261 cd04913/cd04936/cd04913/cd04936 0 1 0 1 Yes Yes No 640545662 absent
32 Gene Neighborhood beta Bacteria Cyanobacteria unclassified Chroococcales unclassified Synechocystis Synechocystis sp. PCC 6803 SYNE-4a 637000315 1148 637012447 fig|1148.1.peg.2965 - slr0657 cd04261 cd04913/cd04936/cd04913/cd04936 1 0 0 1 Yes Yes No 637011825 absent
32 Gene Neighborhood beta Bacteria Cyanobacteria unclassified Chroococcales unclassified Thermosynechococ Thermosynechococcus elongatus BP-1 Telo_Aa 637000320 197221 637314463 fig|197221.1.peg.1832 - tlr1833 cd04246 cd04913/cd04936/cd04913/cd04936 0 1 0 1 Yes No No 637312884 absent
32 Gene Neighborhood beta Bacteria Cyanobacteria unclassified Oscillatoriales unclassified Trichodesmium Trichodesmium erythraeum IMS101 Tery_Aa 637000329 203124 638105447 fig|203124.1.peg.3709 - Tery_0087 cd04261 cd04913/cd04936/cd04913/cd04936 0 1 0 1 Yes No No 638109440 absent
33 Gene Neighborhood beta Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis Ames Bant_Aa 637000014 198094 637302205 fig|198094.1.peg.1661 fig|260799.1.peg.1651, Bacillus anthracis str. Sterne
fig|261591.3.peg.4467, Bacillus anthracis str. Vollum
fig|261594.1.peg.1968, Bacillus anthracis str. 'Ames Ancestor'
fig|280355.3.peg.3084, Bacillus anthracis str. A1055
fig|280477.3.peg.3181, Bacillus anthracis str. Australia 94
fig|205919.3.peg.1706, Bacillus anthracis str. Kruger B
Gene Neighborhood BA1811 cd04261 cd04913/cd04936 1 0 0 2 Yes Yes No 637302346/637305803 637302942 MEQ
33 Gene Neighborhood beta Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus ATCC 10987 Bcer_Aa 637000016 222523 637278703 fig|222523.1.peg.1871 fig|269801.1.peg.1268, Bacillus cereus G9241
fig|288681.3.peg.1862, Bacillus cereus ZK
fig|226900.1.peg.1635, Bacillus cereus ATCC 14579
Gene Neighborhood BCE_1883 cd04261 cd04913/cd04936 1 0 0 2 Yes Yes No 637278870/637282357 637279436 MEQ
33 Gene Neighborhood beta Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus halodurans C-125 Bhal-1_Aa 637000020 272558 637059812 fig|272558.1.peg.3096 - BH3096 cd04261 cd04913/cd04936 0 1 0 3 Yes Yes No 637060139 637057951 637058439 MEQ
33 Gene Neighborhood beta Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus licheniformis ATCC 14580 (Goettingen) Blic_Ab 639279303 279010 639312137 fig|279010.5.peg.3345 - BLi02996 cd04261 cd04913/cd04936 1 0 0 3 Yes Yes No 639312540 MEQ
33 Gene Neighborhood beta Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus subtilis 168 Bsub_Aa 637000022 224308 637033007 fig|224308.1.peg.2850 - BSU28470 cd04261 cd04892/cd04936 1 0 0 3 Yes Yes No 637033411 MEQ
33 Gene Neighborhood beta Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus thuringiensis sv konkukian 97-27 Bthu_Aa 637000023 281309 637513088 fig|281309.3.peg.1740 fig|412694.5.peg.1592, Bacillus thuringiensis str. Al Hakam
Gene Neighborhood BT9727_1658 cd04261 cd04913/cd04936 1 0 0 2 Yes Yes No 637513229/637516521 637513812 MEQ
33 Gene Neighborhood beta Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria innocua Clip11262 Linn_Ab 637000152 272626 637223925 fig|272626.1.peg.1188 - lin1198 cd04261 cd04913/cd04923 1 0 0 3 Yes Yes No 637225465 MEN
33 Gene Neighborhood beta Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes 4b F2365 Lmon_Ab 637000154 265669 637164999 fig|265669.1.peg.1230 fig|267410.1.peg.2673, Listeria monocytogenes str. 4b H7858
fig|393117.3.peg.1055, Listeria monocytogenes FSL J1-194
fig|393121.3.peg.1063, Listeria monocytogenes FSL J2-071
fig|401650.3.peg.813, Listeria monocytogenes Aureli 1997
fig|169963.1.peg.1227, Listeria monocytogenes EGD-e
fig|267409.1.peg.2638, Listeria monocytogenes str. 1/2a F6854
fig|393123.3.peg.764, Listeria monocytogenes FSL N1-017
fig|393124.3.peg.831, Listeria monocytogenes FSL N3-165
fig|393128.3.peg.1006, Listeria monocytogenes F6900
fig|393130.3.peg.2332, Listeria monocytogenes J0161
fig|393133.3.peg.1154, Listeria monocytogenes 10403S
Gene Neighborhood LMOf2365_1244 cd04261 cd04913/cd04923 1 0 0 3 Yes Yes No 637166319 MEN
33 Gene Neighborhood beta Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria welshimeri sv 6b SLCC5334 Lwel_Ab 639633035 386043 639706078 fig|386043.6.peg.1159 - lwe1190 cd04261 cd04913/cd04923 1 0 0 3 Yes Yes No 639707439 MEN
34 Gene Neighborhood beta Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobulbaceae Desulfococcus Desulfococcus oleovorans Hxd3 Dole_Aa 641228490 96561 641263370 fig|96561.3.peg.773 - Dole_0773 cd04261 cd04913/cd04936 1 0 0 2 Yes No No 641262872 MEE
34 Gene Neighborhood beta Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio desulfuricans G20 Ddes_Aa 637000095 207559 637782936 fig|207559.3.peg.2330 - Dde_2048 cd04261 cd04913/cd04936 1 0 0 1 Yes No No 637783633 MEA
34 Gene Neighborhood beta Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio vulgaris vulgaris DP4 Dvul_Aa 639633022 391774 639819482 fig|391774.5.peg.1291 fig|882.1.peg.1905, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Gene Neighborhood Dvul_1251 cd04261 cd04913/cd04936 1 0 0 1 Yes No No 639820337 MEE
34 Gene Neighborhood beta Bacteria Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Lawsonia Lawsonia intracellularis PHE/MN1-00 Lint_Aa 637000145 363253 637988352 - - LI1003 cd04246 cd04913/cd04936 1 0 0 1 No No No MEE
34 Gene Neighborhood beta Bacteria Proteobacteria Deltaproteobacteria Syntrophobacterale Syntrophaceae Syntrophus Syntrophus aciditrophicus SB Saci-5_Aa 637000317 56780 637859864 fig|56780.10.peg.1523 - SYN_02781 cd04261 cd04913/cd04936 0 1 0 1 Yes No No 637859957 MER
35 Gene Neighborhood beta Bacteria Proteobacteria Epsilonproteobacter Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni jejuni NCTC 11168 Cjej_Aa 637000055 192222 637040134 fig|192222.1.peg.543 fig|195099.3.peg.449, Campylobacter jejuni RM1221
fig|354242.8.peg.611, Campylobacter jejuni subsp. jejuni 81-176
fig|360108.3.peg.1524, Campylobacter jejuni subsp. jejuni 260.94
fig|360110.3.peg.1596, Campylobacter jejuni subsp. jejuni 84-25
fig|360111.3.peg.295, Campylobacter jejuni subsp. jejuni CF93-6
fig|360112.3.peg.500, Campylobacter jejuni subsp. jejuni HB93-13
fig|360109.7.peg.1094, Campylobacter jejuni subsp. doylei 269.97
Gene Neighborhood Cj0582 cd04261 cd04913/cd04936 0 1 0 1 Yes No No 637039718 MEQ
35 Gene Neighborhood beta Bacteria Proteobacteria Epsilonproteobacter Campylobacterales Helicobacteraceae Helicobacter Helicobacter acinonychis Sheeba Haci_Aa 637000130 382638 638058878 fig|382638.8.peg.1593 - Hac_1646 cd04261 cd04913/cd04936 0 1 0 1 Yes No No 638058031 MET
35 Gene Neighborhood beta Bacteria Proteobacteria Epsilonproteobacter Campylobacterales Helicobacteraceae Helicobacter Helicobacter hepaticus ATCC 51449 Hhep_Aa 637000131 235279 637431648 fig|235279.1.peg.618 - HH0618 cd04246 cd04913/cd04936 0 1 0 1 Yes No No 637432798 MEK
35 Gene Neighborhood beta Bacteria Proteobacteria Epsilonproteobacter Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori J99 Hpyl_Aa 637000134 85963 637023160 fig|85963.1.peg.1146 fig|85962.1.peg.1217, Helicobacter pylori 26695
Gene Neighborhood jhp1150 cd04261 cd04913/cd04936 0 1 0 1 Yes No No 637022771 MET
35 Gene Neighborhood beta Bacteria Proteobacteria Epsilonproteobacter Campylobacterales Helicobacteraceae Sulfurimonas Sulfurimonas denitrificans DSM 1251 Sden-1_Aa 637000326 326298 637794082 fig|326298.3.peg.1178 - Tmden_1650 cd04261 cd04913/cd04936 1 0 0 1 Yes No No 637794336 MEK
35 Gene Neighborhood beta Bacteria Proteobacteria Epsilonproteobacter Campylobacterales Helicobacteraceae Wolinella Wolinella succinogenes DSM 1740 Wsuc_Aa 637000341 273121 637456904 fig|273121.1.peg.1581 - WS1729 cd04261 cd04913/cd04936 0 1 0 1 Yes No No 637455718 MEN
36 Gene Neighborhood beta Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Geobacteraceae Geobacter Geobacter metallireducens GS-15 Gmet_Aa 637000119 269799 637779171 fig|269799.3.peg.2143 - Gmet_1880 cd04261 cd04913/cd04936 0 1 0 1 Yes No No 637778913 MEA
36 Gene Neighborhood beta Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Geobacteraceae Geobacter Geobacter sulfurreducens PCA Gsul_Aa 637000120 243231 637126486 fig|243231.1.peg.1787 - GSU1799 cd04261 cd04913/cd04936 0 1 0 1 Yes No No 637126374 MEA
36 Gene Neighborhood beta Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Geobacteraceae Geobacter Geobacter uraniumreducens Rf4 Gura_Aa 640427115 351605 640549814 fig|351605.4.peg.2278 - Gura_2318 cd04261 cd04913/cd04936 0 1 0 1 Yes No No 640549675 MEA
36 Gene Neighborhood beta Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Pelobacteraceae Pelobacter Pelobacter carbinolicus DSM 2380 Pcar_Aa 637000204 338963 637750598 fig|338963.3.peg.2078 - Pcar_1006 cd04261 cd04913/cd04936 0 1 0 1 Yes No No 637751044 MET
36 Gene Neighborhood beta Bacteria Proteobacteria Deltaproteobacteria Desulfuromonadales Pelobacteraceae Pelobacter Pelobacter propionicus DSM 2379 Ppro_Aa 639633050 338966 639756310 fig|338966.5.peg.2255 - Ppro_2262 cd04261 cd04913/cd04936 0 1 0 1 Yes No No 639755338 MEG
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae Acidiphilium Acidiphilium cryptum JF-5 Acry_Aa 640427101 349163 640552925 fig|349163.4.peg.1492 - Acry_1008 cd04261 cd04913/cd04936 1 0 0 2 Yes No No 640553214 VEQ
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens C58 (Dupont) Atum_Aa 639279302 176299 639299490 fig|176299.3.peg.3712 - Atu4172 cd04261 cd04913/cd04936 1 0 0 1 Yes Yes No 639291704/639297076 VEQ
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella abortus bv 1 9-941 Babo_Aa 637000039 262698 637645844 fig|262698.3.peg.1809 - BruAb1_1850 cd04261 cd04913/cd04936 1 0 0 1 Yes No No 637645271 VEQ
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bartonellaceae Bartonella Bartonella henselae Houston-1 Bhen_Aa 637000027 283166 637510185 fig|283166.1.peg.371 - BH04030 cd04261 cd04913/cd04936 1 0 0 1 Yes Yes No 637510747 VEQ
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bradyrhizobiaceae Bradyrhizobium Bradyrhizobium japonicum USDA 110 Bjap_Aa 637000038 224911 637367759 fig|224911.1.peg.216 - blr0216 cd04261 cd04913/cd04936 1 0 0 1 Yes No No 637371929 MES
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella melitensis 16M Bmel_Aa 637000040 224914 637247200 fig|224914.1.peg.189 - BMEI0189 cd04261 cd04913/cd04936 1 0 0 1 Yes Yes No 637247757 VEQ
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bartonellaceae Bartonella Bartonella quintana Toulouse Bqui_Aa 637000028 283165 637508888 fig|283165.1.peg.264 - BQ03060 cd04261 cd04913/cd04936 1 0 0 1 No No No LEQ
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bradyrhizobiaceae Bradyrhizobium Bradyrhizobium sp. BTAi1 BRAD-1a 640427103 288000 640562247 fig|288000.5.peg.7372 - BBta_7602 cd04261 cd04913/cd04936 1 0 0 1 Yes No No 640558829 MEN
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Brucellaceae Brucella Brucella suis 1330 Bsui_Aa 637000042 204722 637330812 fig|204722.1.peg.1808 fig|470137.3.peg.3013, Brucella suis ATCC 23445
Gene Neighborhood BR1871 cd04261 cd04913/cd04936 1 0 0 1 Yes Yes No 637330216 VEQ
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter crescentus CB15 Ccre_Aa 637000061 190650 637086878 fig|190650.1.peg.840 - CC0843 cd04261 cd04913/cd04936 1 0 0 1 Yes No No 637087427 MEK
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Erythrobacter Erythrobacter litoralis HTCC2594 Elit_Aa 637000103 314225 637858195 fig|314225.3.peg.109 - ELI_14545 cd04261 cd04913/cd04936 1 0 0 1 Yes No No 637858041 MER
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae Granulobacter Granulobacter bethesdensis CGDNIH1 Gbet_Aa 637000123 391165 638128365 fig|391165.8.peg.606 - GbCGDNIH1_0600 cd04261 cd04913/cd04936 1 0 0 1 Yes No No 638129228 VEK
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae Gluconobacter Gluconobacter oxydans 621H Goxy_Aa 637000122 290633 637622793 fig|290633.1.peg.36 - GOX0037 cd04261 cd04913/cd04936 1 0 0 1 Yes No No 637624266 MEK
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Hyphomonadaceae Hyphomonas Hyphomonas neptunium ATCC 15444 Hnep_Ab 637000135 228405 638143191 fig|228405.5.peg.606 - HNE_0618 cd04261 cd04913/cd04936 1 0 0 2 Yes No No 638144870 VEK
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Jannaschia Jannaschia sp. CCS1 JANN-1a 637000137 290400 637905562 - - Jann_3191 cd04261 cd04913/cd04936 1 0 0 1 Yes Yes No 637905368 VEK
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. BNC1 MESO-1a 637000160 266779 638068891 fig|266779.1.peg.4305 - Meso_3001 cd04261 cd04913/cd04936 1 0 0 1 Yes Yes No 638067817 VEQ
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium loti MAFF303099 Mlot_Aa 637000159 266835 637076000 fig|266835.1.peg.2643 - mll3437 cd04261 cd04913/cd04936 1 0 0 1 Yes Yes No 637074066 VEQ
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Rhodospirillaceae Magnetospirillum Magnetospirillum magneticum AMB-1 Mmag_Aa 637000155 342108 637820222 fig|342108.5.peg.1440 - amb1612 cd04261 cd04913/cd04936 1 0 0 1 Yes No No 637822340 VEK
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium aromaticivorans DSM 12444 Naro_Aa 640427126 279238 640446089 fig|48935.1.peg.3888 - Saro_3304 cd04261 cd04913/cd04936 1 0 0 1 Yes No No 640442744 MEK
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bradyrhizobiaceae Nitrobacter Nitrobacter hamburgensis X14 Nham_Aa 637000192 323097 637969000 fig|323097.3.peg.14 - Nham_0472 cd04261 cd04913/cd04936 1 0 0 1 Yes No No 637970770 MES
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bradyrhizobiaceae Nitrobacter Nitrobacter winogradskyi Nb-255 Nwin_Aa 637000193 323098 637711919 fig|323098.3.peg.848 - Nwi_0379 cd04261 cd04913/cd04936 1 0 0 1 Yes No No 637713205 MES
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Paracoccus Paracoccus denitrificans PD1222 Pden_Aa 639633048 318586 639768181 fig|318586.4.peg.812 - Pden_0862 cd04261 cd04913/cd04936 1 0 0 1 Yes Yes No 639770988 MES
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Roseobacter Roseobacter denitrificans OCh 114 Rden_Aa 639633056 375451 639635571 fig|375451.6.peg.2013 - RD1_2157 cd04261 cd04913/cd04936 1 0 0 1 Yes Yes No 639635920 MES
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Rhizobium Rhizobium etli CFN 42 Retl_Aa 640427137 347834 640440767 - - RHE_CH03758 cd04261 cd04913/cd04936 1 0 0 1 Yes Yes No 640438904 VEQ
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum bv. viciae 3841 Rleg_Aa 639633055 216596 639650169 fig|216596.1.peg.4423 - RL4284 cd04261 cd04913/cd04936 1 0 0 1 Yes Yes No 639647980 639651281 VEQ
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Bradyrhizobiaceae Rhodopseudomonas Rhodopseudomonas palustris CGA009 Rpal_Aa 637000239 258594 637473735 fig|258594.1.peg.601 fig|316055.14.peg.158, Rhodopseudomonas palustris BisA53
fig|316056.14.peg.510, Rhodopseudomonas palustris BisB18
fig|316057.3.peg.223, Rhodopseudomonas palustris BisB5
fig|316058.9.peg.77, Rhodopseudomonas palustris HaA2
Gene Neighborhood RPA0604 cd04261 cd04913/cd04936 1 0 0 1 Yes No No 637475635 MEN
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Rhodospirillaceae Rhodospirillum Rhodospirillum rubrum ATCC 11170 Rrub_Aa 637000241 269796 637824828 - fig|1085.1.peg.1602, Rhodospirillum rubrum
Rru_A0743 cd04261 cd04913/cd04936 1 0 0 1 Yes No No 637826518 VEK
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Rhodobacter Rhodobacter sphaeroides 2.4.1 Rsph_Aa 640069327 272943 640070008 fig|272943.3.peg.638 fig|349101.4.peg.588, Rhodobacter sphaeroides ATCC 17029
fig|349102.4.peg.597, Rhodobacter sphaeroides ATCC 17025
Gene Neighborhood RSP_1849 cd04261 cd04913/cd04936 1 0 0 1 Yes No No 640071613 MES
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingopyxis Sphingopyxis alaskensis RB2256 Sala_Aa 637000271 317655 638010522 fig|317655.9.peg.2070 - Sala_2144 cd04261 cd04913/cd04936 1 0 0 2 Yes No No 638009171 MER
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Silicibacter Silicibacter sp. TM1040 SILI-1a 637000268 292414 638007250 fig|292414.1.peg.322 - TM1040_1934 cd04261 cd04913/cd04936 1 0 0 2 Yes Yes No 638007484 MES
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhizobiales Rhizobiaceae Sinorhizobium Sinorhizobium meliloti 1021 Smel_Aa 637000269 266834 637183435 fig|266834.1.peg.3907 - SMc02438 cd04261 cd04913/cd04936 1 0 0 1 Yes Yes No 637182536 VEQ
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Silicibacter Silicibacter pomeroyi DSS-3 Spom_Aa 637000267 246200 637290501 fig|246200.3.peg.3698 - SPO3035 cd04261 cd04913/cd04936 1 0 0 1 Yes Yes No 637289215 MES
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas wittichii RW1 Swit_Aa 640427144 392499 640584056 fig|392499.4.peg.4526 - Swit_4503 cd04261 cd04913/cd04936 1 0 0 1 Yes No No 640584286 MER
37 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Zymomonas Zymomonas mobilis mobilis ZM4 Zmob_Aa 637000356 264203 637613104 fig|264203.3.peg.496 - ZMO1653 cd04261 cd04913/cd04936 1 0 0 1 Yes No No 637611898 MER
38 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Anaplasmataceae Anaplasma Anaplasma marginale St. Maries Amar_Aa 637000008 234826 637430489 fig|234826.3.peg.717 - AM1005 cd04261 cd04913/cd04936 1 0 0 1 No No No MES
38 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia canis Jake Ecan_Aa 637000097 269484 637698756 fig|269484.4.peg.784 - Ecaj_0808 cd04261 cd04913/cd04936 1 0 0 1 No No No MES
38 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia chaffeensis Arkansas Echa_Aa 637000098 205920 637902117 fig|205920.8.peg.817 - ECH_1001 cd04261 cd04913/cd04936 1 0 0 1 No No No MES
38 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia ruminantium Gardel Erum_Aa 637000099 302409 637628496 fig|302409.3.peg.862 fig|254945.3.peg.756, Ehrlichia ruminantium str. Welgevonden
Gene Neighborhood ERGA_CDS_08060 cd04261 cd04913/cd04936 1 0 0 1 No No No MES
38 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Orientia Orientia tsutsugamushi Boryong Otsu_Aa 640427127 357244 640567981 - - OTBS_1537 cd04246 1 0 0 1 No No No MEQ
38 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia bellii RML369-C Rbel_Aa 637000242 336407 637931534 fig|336407.4.peg.1101 - RBE_1404 cd04261 cd04891/cd04923 1 0 0 1 No No No MEK
38 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia conorii Malish 7 Rcon_Aa 637000243 272944 637194422 fig|272944.1.peg.1164 - RC1164 cd04261 cd00000cd04936 1 0 0 1 No No No MEN
38 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia felis URRWXCal2 Rfel_Aa 637000244 315456 637661583 fig|315456.3.peg.1200 - RF_1200 cd04261 cd04891/cd04923 1 0 0 1 No No No MEN
38 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia prowazekii Madrid E Rpro_Aa 637000245 272947 637029943 fig|272947.1.peg.709 - RP753 cd04261 cd00000cd04936 1 0 0 1 No No No absent
38 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia typhi Wilmington Rtyp_Aa 637000246 257363 637531302 fig|257363.1.peg.705 - RT0738 cd04261 cd00000cd04936 1 0 0 1 No No No absent
38 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Wolbachia Wolbachia endosymbiont of Drosophila melanogast Wend_a 637000339 163164 637173116 fig|163164.1.peg.855 - WD0960 cd04261 cd00000cd04923 1 0 0 1 No No No VLH
39 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella amazonensis SB2B Sama_Aa 639633057 326297 639780388 fig|326297.7.peg.989 - Sama_1049 cd04261 cd04891/cd04923 1 0 0 4 Yes Yes No absent
39 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella baltica OS155 Sbal_Aa 640069330 325240 640120373 fig|325240.9.peg.3467 fig|399599.3.peg.3327, Shewanella baltica OS195
fig|402882.10.peg.3329, Shewanella baltica OS185
Gene Neighborhood Sbal_3114 cd04261 cd00000cd04936 1 0 0 4 Yes Yes No absent
39 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella oneidensis MR-1 Sone_Aa 637000258 211586 637345236 fig|211586.1.peg.3125 - SO3427 cd04261 cd00000cd04936 1 0 0 4 Yes Yes No absent
39 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella putrefaciens CN-32 Sput_Aa 640427141 319224 640499938 fig|319224.13.peg.2526 - Sputcn32_2744 cd04261 cd00000cd04936 1 0 0 4 Yes Yes No absent
39 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella sp. ANA-3 SHEW-3a 639633058 94122 639725672 fig|94122.5.peg.1250 - Shewana3_1129 cd04261 cd00000cd04936 1 0 0 4 Yes Yes No absent
39 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Photobacterium Photobacterium profundum SS9 Ppro_Bb 637000206 298386 637587767 fig|298386.1.peg.5290 fig|314280.3.peg.3787, Photobacterium profundum 3TCK
Gene Neighborhood PBPRA3066 cd04261 1 0 0 5 Yes Yes No absent
39 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio cholerae O1 biovar eltor str. N16961 Vcho_Fe 637000333 243277 637047009 fig|243277.1.peg.539 fig|345073.6.peg.932, Vibrio cholerae O395
Gene Neighborhood VC0547 cd04261 1 0 0 5 Yes Yes No absent
39 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio fischeri ES114 Vfis_Aa 637000334 312309 637635181 fig|312309.3.peg.537 fig|388396.7.peg.632, Vibrio fischeri MJ11
Gene Neighborhood VF0537 cd04261 0 1 0 5 Yes Yes No absent
39 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus RIMD 2210633 Vpar_Aa 637000335 223926 637399543 fig|223926.1.peg.2547 - VP2547 cd04261 1 0 0 5 Yes Yes No absent
39 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio vulnificus CMCP6 Vvul_Ad 637000336 216895 637361949 fig|216895.1.peg.4790 fig|196600.1.peg.2870, Vibrio vulnificus YJ016
Gene Neighborhood VV11594 cd04261 1 0 0 4 Yes Yes No absent
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax avenae citrulli AAC00-1 Aave_Aa 639633002 397945 639823527 fig|397945.5.peg.2008 - Aave_2324 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 639822431 639821227 MEQ
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. JS42 ACID-3a 639633003 232721 639838717 fig|232721.5.peg.1712 - Ajs_1628 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 639840246 639841193 MEK
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Rhodocyclales Rhodocyclaceae Azoarcus Azoarcus sp. EbN1 AZOA-1a 637000012 76114 637607544 fig|76114.4.peg.883 - ebA637 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637610082 MEQ
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cepacia AMMD Bamb_Aa 637000047 339670 638149934 fig|339670.3.peg.3893 - Bamb_2109 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 638149606 638152130 MEK
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella bronchiseptica RB50 Bbro_Aa 637000032 257310 637103870 fig|257310.1.peg.1731 - BB1739 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637104065 MEA
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cenocepacia AU 1054 Bcen_Da 637000046 331271 638019283 fig|331271.3.peg.2038 fig|331272.3.peg.4705, Burkholderia cenocepacia HI2424
fig|350702.3.peg.2793, Burkholderia cenocepacia PC184
fig|216591.1.peg.7625, Burkholderia cenocepacia J2315
Gene Neighborhood Bcen_6003 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 638019515 MEK
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mallei ATCC 23344 Bmal_Ca 637000048 243160 637562332 fig|243160.4.peg.932 fig|320386.3.peg.2861, Burkholderia mallei 10229
fig|320387.3.peg.4317, Burkholderia mallei 10399
fig|320388.3.peg.919, Burkholderia mallei SAVP1
fig|320389.3.peg.3091, Burkholderia mallei NCTC 10247
fig|320390.3.peg.1068, Burkholderia mallei GB8 horse 4
fig|334802.3.peg.3187, Burkholderia mallei FMH
fig|334803.3.peg.3270, Burkholderia mallei JHU
Gene Neighborhood BMA1652 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637562090 MEK
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella parapertussis 12822 Bpar_Aa 637000033 257311 637109374 fig|257311.1.peg.2167 - BPP2287 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637109559 MEA
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella pertussis Tohama I Bper_Aa 637000034 257313 637113122 fig|257313.1.peg.1675 - BP1913 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637113924 MEA
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei 1710b Bpse_Ga 637000049 320372 637729133 fig|320372.3.peg.5620 fig|272560.3.peg.4504, Burkholderia pseudomallei K96243
fig|320371.3.peg.3173, Burkholderia pseudomallei 1710a
fig|331978.3.peg.3071, Burkholderia pseudomallei Pasteur
fig|320373.3.peg.3225, Burkholderia pseudomallei 668
fig|331109.3.peg.3843, Burkholderia pseudomallei 1655
fig|320374.3.peg.3601, Burkholderia pseudomallei S13
Gene Neighborhood BURPS1710 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637728852 MEK
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia thailandensis E264 Btha_Aa 637000052 271848 637841614 - - BTH_I1945 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637841867 MEK
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. 383 BURK-1a 637000051 269483 637763687 fig|269483.3.peg.6757 - Bcep18194 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637763451 MEK
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia vietnamiensis G4 Bvie_Aa 640069307 269482 640187751 fig|269482.4.peg.5297 - Bcep1808_1976 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 640187546 MEK
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia xenovorans LB400 Bxen_Aa 637000053 266265 637948002 fig|36873.1.peg.5522 - Bxe_A1630 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637947257 MEK
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia eutropha H16 Cnec_Ba 640427136 381666 640447345 - fig|264198.3.peg.1628, Ralstonia eutropha JMP134
H16_A1225 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 640448357 MEA
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Chromobacterium Chromobacterium violaceum ATCC 12472 Cvio_Aa 637000074 243365 637451784 fig|243365.1.peg.1018 - CV1018 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637451762 MEK
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Rhodocyclales Rhodocyclaceae Dechloromonas Dechloromonas aromatica RCB Daro_Aa 637000088 159087 637680982 fig|159087.4.peg.2879 - Daro_2515 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637680853 MEQ
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Burkholderiales Oxalobacteraceae Herminiimonas Herminiimonas arsenicoxydans Hars_a 640069313 204773 640168614 fig|204773.3.peg.1221 - HEAR1290 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 640169447 MEQ
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Methylophilales Methylophilaceae Methylobacillus Methylobacillus flagellatus KT Mfla_Aa 637000165 265072 637937467 fig|265072.7.peg.563 - Mfla_0567 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637937804/637937948 MEQ
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Burkholderiales unclassified Methylibium Methylibium petroleiphilum PM1 Mpet_Aa 640069319 420662 640091022 fig|420662.8.peg.2305 - Mpe_A2452 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 640090108 MEQ
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas europaea ATCC 19718 Neur_Aa 637000195 228410 637428452 fig|228410.1.peg.2035 - NE2132 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637428683 MEQ
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas eutropha C71 Neut_Aa 637000196 335283 638132307 fig|335283.5.peg.2442 - Neut_2084 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 638131104 MEQ
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae FA 1090 Ngon_Aa 637000188 242231 637142190 fig|242231.4.peg.468 - NGO0956 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637142036 MER
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis FAM18 Nmen_Aa 639633045 272831 639828255 fig|487.2.peg.989 fig|122587.1.peg.1560, Neisseria meningitidis Z2491
fig|122586.1.peg.1440, Neisseria meningitidis MC58
Gene Neighborhood NMC1429 cd04261 cd04913/cd04936 0 1 0 2re1 1 Yes Yes No 639828004 MER
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosospira Nitrosospira multiformis ATCC 25196 Nmul_Aa 637000197 323848 637812028 fig|323848.3.peg.2115 - Nmul_A194 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637811639 MER
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Polaromonas Polaromonas naphthalenivorans CJ2 Pnap_Aa 639633051 365044 639835896 - - Pnap_2889 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 639835241 MEK
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Polaromonas Polaromonas sp. JS666 POLA-1a 637000208 296591 637942524 fig|296591.1.peg.5451 - Bpro_2860 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637941861/637944955 MEQ
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Polynucleobacter Polynucleobacter sp. QLW-P1DMWA-1 POLY-1a 640427129 312153 640471021 fig|312153.3.peg.890 - Pnuc_0862 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 640470591 MEA
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Rhodoferax Rhodoferax ferrireducens T118 Rfer_Aa 637000235 338969 637916169 fig|338969.3.peg.2618 - Rfer_1353 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637916732 MEQ
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia metallidurans CH34 Rmet_Aa 637000230 266264 637976470 fig|266264.4.peg.1494 - Rmet_1089 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637977349 MEA
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia solanacearum GMI1000 Rsol_Aa 637000231 267608 637237540 fig|267608.1.peg.1171 - RSc1171 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637237705 MEA
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Hydrogenophilales Hydrogenophilaceae Thiobacillus Thiobacillus denitrificans ATCC 25259 Tden_Aa 637000324 292415 637709650 fig|292415.3.peg.596 - Tbd_0969 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637709521 MEQ
40 Gene Neighborhood beta Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Verminephrobacte Verminephrobacter eiseniae EF01-2 Veis_Aa 639633065 391735 639852675 fig|391735.5.peg.4540 - Veis_4940 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 639850427 MEQ
41 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-upper Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter sp. ADP1 ACIN-1a 637000002 62977 637517791 fig|62977.3.peg.321 - ACIAD1252 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637516863 MEQ
41 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-upper Pseudomonadales Moraxellaceae Psychrobacter Psychrobacter arcticus 273-4 Parc_Aa 637000226 259536 637670150 fig|259536.4.peg.1297 - Psyc_1461 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637668940 MEQ
41 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-upper Pseudomonadales Moraxellaceae Psychrobacter Psychrobacter cryohalolentis K5 Pcry_Aa 637000227 335284 637974104 fig|335284.3.peg.1673 - Pcryo_1639 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637972728 MEQ
41 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-upper Pseudomonadales Moraxellaceae Psychrobacter Psychrobacter sp. PRwf-1 PSYC-4a 640427134 349106 640599834 fig|349106.5.peg.1695 fig|259536.4.peg.1297, Psychrobacter sp. 273-4
Gene Neighborhood PsycPRwf_1612 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 640600242 MEQ
42 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-upper sulfur-oxidizing unclassified unclassified Candidatus Vesicomyosocius okutanii HA Voku_Aa 640427107 412965 640538005 fig|412965.6.peg.531 - COSY_0540 cd04261 cd04913/cd04936 0 1 0 1 Yes No No 640538170 VEQ
42 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-upper unclassified unclassified Ruthia Candidatus Ruthia magnifica Cm Rmag_Aa 639633019 413404 639758237 fig|413404.7.peg.640 - Rmag_0585 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 639758402 VEQ
43 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-upper Alteromonadales Alteromonadaceae Marinobacter Marinobacter aquaeolei VT8 Mhyd_Aa 639633037 351348 639810929 fig|351348.5.peg.1298 - Maqu_0966 cd04261 cd04913/cd04936 1 0 0 2 Yes Yes No 639812248 MEQ
43 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-upper Alteromonadales Alteromonadaceae Saccharophagus Saccharophagus degradans 2-40 Sdeg_Aa 637000249 203122 637920374 fig|203122.12.peg.1298 - Sde_1300 cd04261 cd04913/cd04936 1 0 0 2 Yes Yes No 637920283 MEQ
43 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-upper Oceanospirillales Alcanivoracaceae Alcanivorax Alcanivorax borkumensis SK2 Abor_Aa 637000004 393595 638079904 fig|393595.12.peg.1801 - ABO_1797 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 638078892 MEK
43 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-upper Oceanospirillales Hahellaceae Hahella Hahella chejuensis KCTC 2396 Hche_Aa 637000128 349521 637835465 fig|349521.5.peg.4573 - HCH_5208 cd04261 cd04913/cd04936 1 0 0 1 Yes Yes No 637832160 MEQ
43 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-upper Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas sp. MWYL1 MARI_Aa 640753033 400668 640806010 fig|400668.6.peg.3703 - Mmwyl1_3627 cd04261 cd04913/cd04936 0 1 0 2 Yes Yes No 640806148 MEQ
43 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-upper Pseudomonadales Pseudomonadaceae Azotobacter Azotobacter vinelandii AvOP Avin_Aa 638341010 322710 638377748 fig|354.1.peg.2648 - AvinDRAFT_4829 cd04261 cd04913/cd04936 1 0 0 1 Yes Yes No 638378992 MEQ
43 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-upper Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa PAO1 Paer_Aa 637000218 208964 637051291 fig|208964.1.peg.905 fig|208963.3.peg.2535, Pseudomonas aeruginosa UCBPP-PA14
fig|350703.3.peg.1081, Pseudomonas aeruginosa 2192
Gene Neighborhood PA0904 cd04261 cd04913/cd04936 1 0 0 1 Yes Yes No 637054155 MEQ
43 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-upper Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas entomophila L48 Pent_Aa 637000219 384676 638002792 fig|384676.6.peg.3334 - PSEEN3874 cd04261 cd04913/cd04936 1 0 0 1 Yes Yes No 638003150 MEQ
43 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-upper Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Pf-5 Pflu_Aa 637000220 220664 637321842 fig|220664.3.peg.5000 fig|205922.3.peg.4809, Pseudomonas fluorescens PfO-1
fig|216595.1.peg.6472, Pseudomonas fluorescens SBW25
Gene Neighborhood PFL_4505 cd04261 cd04913/cd04936 1 0 0 1 Yes Yes No 637318443 637321146 MEQ
43 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-upper Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas mendocina ymp Pmen_Aa 640427131 399739 640504157 fig|399739.6.peg.2808 - Pmen_2902 cd04261 cd04913/cd04936 1 0 0 1 Yes Yes No 640504650 640503253 MEQ
43 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-upper Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida F1 Pput_Aa 640427132 351746 640585907 fig|351746.4.peg.1423 fig|160488.1.peg.4414, Pseudomonas putida KT2440
fig|76869.3.peg.3952, Pseudomonas putida GB-1
fig|390235.3.peg.3738, Pseudomonas putida W619
Gene Neighborhood Pput_1442 cd04261 cd04913/cd04936 1 0 0 1 Yes Yes No 640588728 640585156 MEQ
43 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-upper Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas stutzeri A1501 Pstu_Aa 640427133 379731 640487327 - - PST_1370 cd04261 cd04913/cd04936 1 0 0 2 Yes Yes No 640487154 MEQ
43 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-upper Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae pv. syringae B728a Psyr_Aa 637000224 205918 637653910 fig|205918.4.peg.3992 fig|223283.1.peg.1805, Pseudomonas syringae pv. tomato str. DC3000
fig|264730.3.peg.3410, Pseudomonas syringae pv. phaseolicola 1448A
Gene Neighborhood Psyr_3555 cd04261 cd04913/cd04936 1 0 0 1 Yes Yes No 637651629 MEQ
44 Gene Neighborhood beta Bacteria Chloroflexi Dehalococcoidetes Dehalococcoides unclassified Dehalococcoides Dehalococcoides ethenogenes 195 Deth_Aa 637000089 243164 637121190 fig|243164.3.peg.1571 - DET1633 cd04246 cd04913/cd04936 0 1 0 1 Yes No No 637120769 MEI
44 Gene Neighborhood beta Bacteria Chloroflexi Dehalococcoidetes Dehalococcoides unclassified Dehalococcoides Dehalococcoides sp. CBDB1 DEHA-1a 637000090 255470 637704070 fig|255470.3.peg.656 fig|216389.5.peg.1363, Dehalococcoides sp. BAV1
Gene Neighborhood cbdb_A173 cd04246 cd04913/cd04936 0 1 0 1 Yes No No 637703545 MEI
45 Gene Neighborhood beta Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Desulfotomaculum Desulfotomaculum reducens MI-1 Dred_Ab 640069310 349161 640180336 fig|349161.4.peg.1149 - Dred_1167 cd04261 cd04913/cd04936 1 0 0 2 Yes No No 640180334 MEN
45 Gene Neighborhood beta Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Pelotomaculum Pelotomaculum thermopropionicum SI Pthe_Aa 640427128 370438 640527571 - - PTH_1599 cd04246 cd04913/cd04936 0 1 0 2 Yes No No 640527573 MEK
45 Gene Neighborhood beta Bacteria Firmicutes Clostridia Clostridiales Syntrophomonadaceae Caldicellulosiru Caldicellulosiruptor saccharolyticus DSM 8903 Csac_Aa 640427106 351627 640495342 fig|351627.4.peg.940 - Csac_0991 cd04246 cd04913/cd04936 0 1 0 1 Yes No No 640495344 VEK
46 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-upper Chromatiales Chromatiaceae Nitrosococcus Nitrosococcus oceani ATCC 19707 Noce_Aa 637000194 323261 637737435 fig|323261.3.peg.1079 - Noc_0927 cd04261 cd04913/cd04936 1 0 0 2 Yes Yes No 637738933 MEE
46 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-upper Chromatiales Ectothiorhodospiraceae Alkalilimnicola Alkalilimnicola ehrlichei MLHE-1 Aehr_Aa 637000005 187272 638126238 fig|187272.6.peg.1420 - Mlg_1480 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 638126578 MEE
46 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-upper Chromatiales Ectothiorhodospiraceae Halorhodospira Halorhodospira halophila SL1 Hhal_Aa 639633026 349124 639856119 fig|349124.5.peg.1621 - Hhal_1652 cd04261 cd04913/cd04936 1 0 0 1 Yes Yes No 639854583 MEE
47 Gene Neighborhood alpha Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Crenotrichaceae Salinibacter Salinibacter ruber DSM 13855 Srub_Ab 637000250 309807 637843484 fig|309807.5.peg.443 - SRU_0481 cd04243 1 0 0 4 Yes No No 637843485 absent
47 Gene Neighborhood alpha Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Crenotrichaceae Salinibacter Salinibacter ruber DSM 13855 Srub_Aa 637000250 309807 637844738 fig|309807.5.peg.1651 - SRU_1745 cd04243 1 0 0 4 Yes No No 637843485 absent
48 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-lower Aeromonadales Aeromonadaceae Aeromonas Aeromonas hydrophila hydrophila ATCC 7966 Ahyd_Aa 639633004 380703 639716287 fig|380703.5.peg.3520 - AHA_3713 cd04261 cd04913/cd04936 0 1 0 4 Yes Yes No MEA
48 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-lower Aeromonadales Aeromonadaceae Aeromonas Aeromonas salmonicida salmonicida A449 Asal_Aa 641522605 382245 640466692 fig|382245.6.peg.3573 - ASA_3812 cd04261 cd04913/cd04936 0 1 0 4 Yes Yes No MEA
49 Gene Neighborhood alpha Archaea Crenarchaeota Thermoprotei marine archaeal group 1 Nitrosopumilaceae Nitrosopumilus Nitrosopumilus maritimus SCM1 Nmar_Aa 641228499 436308 641315811 fig|436308.3.peg.189 - Nmar_0193 cd04243 cd00000cd04892 1 0 0 2 Yes No No 641316332 absent
49 Gene Neighborhood alpha Archaea Crenarchaeota Thermoprotei Cenarchaeales Cenarchaeaceae Cenarchaeum Cenarchaeum symbiosum A Csym_Aa 641522613 414004 641735396 - - CENSYa_1371 cd04234 KFGS 0 0 2 Yes No No 641734288 absent
50 Gene Neighborhood alpha Archaea Crenarchaeota Thermoprotei marine archaeal group 1 Nitrosopumilaceae Nitrosopumilus Nitrosopumilus maritimus SCM1 Nmar_Ab 641228499 436308 641317409 fig|436308.3.peg.1750 - Nmar_1754 cd04244 cd04921/cd04924 0 1 0 2 Yes No No 641316332 absent
50 Gene Neighborhood alpha Archaea Crenarchaeota Thermoprotei Cenarchaeales Cenarchaeaceae Cenarchaeum Cenarchaeum symbiosum A Csym_Ab 641522613 414004 641735448 - - CENSYa_1423 cd04244 cd04921/cd04924 0 1 0 2 Yes No No 641734288 absent
51 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Hyphomonadaceae Maricaulis Maricaulis maris MCS10 Mmar_Aa 637000157 394221 638141761 fig|394221.5.peg.2220 - Mmar10_2259 cd04261 cd04913/cd04936 1 0 0 3 Yes No No 638142117 VVS
51 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Hyphomonadaceae Oceanicaulis Oceanicaulis alexandrii HTCC2633 Oale_Aa 638341138 314254 638891510 fig|314254.3.peg.2297 - OA2633_06799 cd04261 cd00000cd04936 1 0 0 3 Yes No No 638891809 VTP
52 Gene Neighborhood alpha Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Hyphomonadaceae Maricaulis Maricaulis maris MCS10 Mmar_Ac 637000157 394221 638140576 fig|394221.5.peg.1069 - Mmar10_1098 Ask/Hdh cd04243 KFGS 0 0 3 Yes No No 638142117 absent
52 Gene Neighborhood alpha Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Hyphomonadaceae Oceanicaulis Oceanicaulis alexandrii HTCC2633 Oale_Ac 638341138 314254 638891831 fig|314254.3.peg.2638 - OA2633_08389 Ask/Hdh cd04234 1 0 0 3 Yes No No 638891809 absent
99 Gene Neighborhood alpha Archaea Euryarchaeota Methanopyri Methanopyrales Methanopyraceae Methanopyrus Methanopyrus kandleri AV19 Mkan_Ab 638154507 190192 638168109 fig|190192.1.peg.109 - MK0109 cd04244 cd04921/cd04924 1 0 0 2 Yes No Yes 638169614 absent
99 Gene Neighborhood alpha Bacteria Acidobacteria Solibacteres Solibacterales Solibacteraceae Solibacter Solibacter usitatus Ellin6076 Susi_Ab 639633060 234267 639679600 fig|234267.9.peg.50 - Acid_0052 cd04243 cd04892/cd04892 1 0 0 2 Yes No No 639680070 639686527 absent
99 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Frankiaceae Frankia Frankia sp. CcI3 FRAN-2a 637000116 106370 637879407 fig|106370.11.peg.2049 - Francci3_2071 cd04246 0 1 0 2 Yes No No 637881051 absent
99 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Frankiaceae Frankia Frankia alni ACN14a Faln_Aa 637000115 326424 638099125 - - FRAAL2411 cd04246 1 0 0 2 Yes No No 638102598 absent
99 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Microbacteriaceae Tropheryma Tropheryma whipplei TW08/27 Twhi_Aa 637000330 218496 637381758 fig|218496.1.peg.691 fig|203267.1.peg.708, Tropheryma whipplei str. Twist
Gene Neighborhood TW725 cd04261 cd04913/cd04936 0 1 0 1 Yes No No 637381345 MEE
99 Gene Neighborhood beta Bacteria Actinobacteria Actinobacteridae Actinomycetales Streptomycetaceae Streptomyces Streptomyces griseus subsp. griseus NBRC 13350 Sgri_Ab 641522653 455632 641698599 - - SGR_4250 cd04246 cd00000cd4936 0 1 0 2 Yes No No 641696496 MLE
99 Gene Neighborhood alpha Bacteria Actinobacteria Rubrobacteridae Rubrobacterales Rubrobacteraceae Rubrobacter Rubrobacter xylanophilus DSM 9941 Rxyl_Aa 637000248 266117 638035880 fig|266117.6.peg.1000 - Rxyl_1090 cd04243 1 0 0 2 Yes No No 638035881 absent
99 Gene Neighborhood beta Bacteria Actinobacteria Rubrobacteridae Rubrobacterales Rubrobacteraceae Rubrobacter Rubrobacter xylanophilus DSM 9941 Rxyl_Ab 637000248 266117 638034891 fig|266117.6.peg.91 - Rxyl_0098 cd04261 cd04913/cd04936 0 1 0 2 Yes No No 638035881 VEH
99 Gene Neighborhood beta Bacteria Aquificae Aquificae (class) Aquificales Aquificaceae Aquifex Aquifex aeolicus VF5 Aaeo_Aa 637000010 224324 637020168 fig|224324.1.peg.800 - aq_1152 cd04261 cd04913/cd04936 1 0 0 1 Yes No No 637020645 MEK
99 Gene Neighborhood alpha Bacteria Chloroflexi Chloroflexi (class) Chloroflexales Chloroflexaceae Roseiflexus Roseiflexus sp. RS-1 ROSE-4a 640427139 357808 640596670 fig|357808.3.peg.2973 - RoseRS_3079 cd04244 cd04921/cd04922 1 0 0 2 Yes No No 640595579/640596579 absent
99 Gene Neighborhood alpha Bacteria Chloroflexi Chloroflexi (class) Chloroflexales Chloroflexaceae Roseiflexus Roseiflexus sp. RS-1 ROSE-4b 640427139 357808 640595637 fig|357808.3.peg.1951 - RoseRS_2031 cd04243 cd04921 KFGA 0 0 2 Yes No No 640595579/640596579 absent
99 Gene Neighborhood beta Bacteria Deinococcus-Th Deinococci Thermales Thermaceae Thermus Thermus thermophilus HB27 Tthe_Aa 637000322 262724 637498796 fig|262724.1.peg.166 fig|300852.3.peg.1, Thermus thermophilus HB8
Gene Neighborhood TTC0166 cd04261 cd04913/cd04936 0 1 0 2dt9 1 Yes No No 637498743 MEM
99 Gene Neighborhood beta Bacteria Firmicutes Clostridia Clostridiales unclassified Symbiobacterium Symbiobacterium thermophilum IAM 14863 Sthe-17_Ab 637000306 292459 637538207 fig|292459.1.peg.1624 - STH1686 cd04261 cd04913/cd04936 1 0 0 2 Yes No No 637539275 VVA
99 Gene Neighborhood beta Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Carboxydothermus Carboxydothermus hydrogenoformans Z-2901 Chyd_Aa 637000060 246194 637754649 fig|246194.3.peg.2528 - CHY_1909 cd04261 cd04913/cd04923 0 1 0 2 Yes No No 637754652 LEK
99 Gene Neighborhood beta Bacteria Firmicutes Clostridia Clostridiales Syntrophomonadaceae Syntrophomonas Syntrophomonas wolfei wolfei Goettingen Swol_Aa 637000316 335541 638138198 fig|335541.4.peg.1266 - Swol_1317 cd04261 cd04913/cd04936 1 0 0 1 Yes No No 638138200 MEN
99 Gene Neighborhood beta Bacteria Firmicutes Clostridia Thermoanaerobacter Thermoanaerobacteriace Moorella Moorella thermoacetica ATCC 39073 Mthe-3_Aa 637000167 264732 637829240 fig|264732.9.peg.1298 - Moth_1304 cd04261 cd04913/cd04936 0 1 0 2 Yes No No 637829243 MER
99 Gene Neighborhood beta Bacteria Planctomycetes Planctomycetacia Planctomycetales Planctomycetaceae Rhodopirellula Rhodopirellula baltica SH 1 Rbal_Aa 637000236 243090 637438000 fig|243090.1.peg.4964 - RB8926 cd04261 cd04913/cd04936/cd04913/cd04936 1 0 0 1 Yes Yes No 637437770 MIV
99 Gene Neighborhood beta Bacteria Proteobacteria Alphaproteobacteria Rickettsiales SAR11 Pelagibacter Candidatus Pelagibacter ubique HTCC1062 Pubi_Aa 637000058 335992 637671386 fig|335992.3.peg.881 - SAR11_0516 cd04261 cd04913/cd04936 1 0 0 1 Yes No No 637671897 absent
99 Gene Neighborhood beta Bacteria Proteobacteria Deltaproteobacteria Myxococcales Myxococcaceae Myxococcus Myxococcus xanthus DK 1622 Mxan_Ab 637000186 246197 638024825 fig|246197.19.peg.6686 - MXAN_3466 cd04261 cd04913/cd04936 0 1 0 4 Yes No No MED
99 Gene Neighborhood alpha Bacteria Proteobacteria Deltaproteobacteria Myxococcales Myxococcaceae Myxococcus Myxococcus xanthus DK 1622 Mxan_Ac 637000186 246197 638023646 fig|246197.19.peg.1997 - MXAN_2278 Ask/Hdh cd04243 cd04921/cd04922 1 0 0 4 Yes No No absent
99 Gene Neighborhood alpha Bacteria Proteobacteria Deltaproteobacteria Myxococcales Myxococcaceae Myxococcus Myxococcus xanthus DK 1622 Mxan_Ad 637000186 246197 638022362 fig|246197.19.peg.856 - MXAN_0971 Ask/Hdh cd04243 cd04921/cd04922 1 0 0 4 Yes No No absent
99 Gene Neighborhood beta Bacteria Proteobacteria Deltaproteobacteria Syntrophobacterale Syntrophobacteraceae Syntrophobacter Syntrophobacter fumaroxidans MPOB Sfum_Aa 639633063 335543 639702939 fig|335543.6.peg.2239 - Sfum_2173 cd04261 cd04913/cd04936 0 1 0 1 Yes No No 639701985 MEK
99 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Pseudoalteromonadaceae Pseudoalteromona Pseudoalteromonas haloplanktis TAC125 Phal_Aa 637000217 326442 637733416 fig|326442.4.peg.508 - PSHAa0533 cd04261 cd04913/cd04936 1 0 0 4 Yes Yes No MPG
99 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Psychromonadaceae Psychromonas Psychromonas ingrahamii 37 Ping_Aa 639633052 357804 639798495 fig|357804.5.peg.3194 - Ping_3379 cd04261 cd04913/cd04936 0 1 0 2 Yes Yes No MES
99 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-upper Cardiobacteriales Cardiobacteriaceae Dichelobacter Dichelobacter nodosus VCS1703A Dnod_Aa 640427112 246195 640524868 - - DNO_0285 cd04261 cd04891/cd04923 0 1 0 1 No No No VEG
99 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-upper Legionellales Coxiellaceae Coxiella Coxiella burnetii RSA 493 Cbur_Aa 637000086 227377 637162720 fig|227377.1.peg.996 - CBU_1051 cd04261 cd04913/cd04936 1 0 0 1 No No No absent
99 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-upper Methylococcales Methylococcaceae Methylococcus Methylococcus capsulatus Bath Mcap_Aa 637000166 243233 637169609 fig|243233.4.peg.825 - MCA0390 cd04261 cd04913/cd04936 0 1 0 1 Yes Yes No 637169810 VEK
99 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-upper Oceanospirillales Halomonadaceae Chromohalobacter Chromohalobacter salexigens DSM 3043 Csal_Aa 637000075 290398 637965794 fig|290398.4.peg.429 - Csal_0626 cd04261 cd04913/cd04936 1 0 0 1 Yes Yes No 637968216 MEE
99 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria-upper Thiotrichales Piscirickettsiaceae Thiomicrospira Thiomicrospira crunogena XCL-2 Tcru_Aa 637000325 317025 637786326 fig|317025.3.peg.1286 - Tcr_1589 cd04261 cd04913/cd04936 0 1 0 2 Yes Yes No 637785983 MEK
99 Gene Neighborhood beta Bacteria Proteobacteria Gammaproteobacteria unclassified unclassified Carsonella Candidatus Carsonella ruddii PV Crud_Aa 639633018 387662 639660685 - - CRP_108 cd04246 cd04913/cd04923 1 0 0 1 Yes No No 639660701 MER
99 Gene Neighborhood beta Bacteria Proteobacteria unclassified unclassified unclassified Magnetococcus Magnetococcus sp. MC-1 MAGN-2a 639633036 156889 639721714 fig|156889.7.peg.1026 - Mmc1_0966 cd04261 cd04913/cd04936 1 0 0 1 Yes Yes No 639722498 MES