| Publications |
Jensen, R. A. and W. Gu 1996. Evolutionary recruitment of biochemically specialized subdivisions of Family I within the protein superfamily of aminotransferases. J Bacteriol 178:2161-71 [PDF]
Gu, W., D. S. Williams, H. C. Aldrich, G. Xie, D. W. Gabriel, and R. A. Jensen. 1997. The aroQ and pheA domains of the bifunctional
P-protein from Xanthomonas campestris in a context of genomic comparison.
Microb Comp Genomics 2:141-58.
Subramaniam, P. S., G. Xie, T. Xia, and R. A. Jensen.
1998. Substrate ambiguity of 3-deoxy-D-manno-octulosonate 8-phosphate synthase from
Neisseria gonorrhoeae in the context of its membership in a protein family
containing a subset of 3-deoxy-D-arabino-heptulosonate 7-phosphate synthases. J
Bacteriol 180:119-27.
Xie, G., C. A. Bonner, and R. A. Jensen. 1999.
A probable mixed-function supraoperon in Pseudomonas exhibits gene organization
features of both intergenomic conservation and gene shuffling. J Mol Evol 49:108-21.
Xie, G., T. S. Brettin, C. A. Bonner, and R. A. Jensen. 1999. Mixed-function supraoperons that exhibit overall conservation,
albeit shuffled gene organization, across wide intergenomic distances within
eubacteria. Microb Comp Genomics 4:5-28.
Calhoun, D. H., C. A. Bonner, W. Gu, G. Xie, and R. A. Jensen. 2001. The emerging periplasm-localized subclass of
AroQ chorismate mutases, exemplified by those from Salmonella typhimurium and
Pseudomonas aeruginosa. Genome Biol 2:RESEARCH0030.
Gosset, G., C. A. Bonner, and R. A. Jensen. 2001.
Microbial origin of plant-type 2-keto-3-deoxy-D-arabino-heptulosonate 7-phosphate
synthases, exemplified by the chorismate- and tryptophan-regulated enzyme from
Xanthomonas campestris. J Bacteriol 183:4061-70.
Jensen, R. A., G. Xie, D. H. Calhoun, and C. A. Bonner.
2002. The correct phylogenetic relationship of KdsA (3-Deoxy-D-manno-octulosonate 8-phosphate synthase) with one of two independently evolved classes of AroA (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase), J. Mol. Evol.
54:416-423.
Xie, G., C. Forst, C. Bonner, and R. A. Jensen.
2002. Significance of two distinct types of tryptophan synthase beta chain in
Bacteria, Archaea and higher plants. Genome Biol 3:RESEARCH0004.
Xie, G., N. O. Keyhani, C. A. Bonner, and R. A. Jensen. 2003. Ancient origin of the tryptophan operon and the dynamics of
evolutionary change. Microbiol Mol Biol Rev 67:303-42, table of contents.
Xie, G., C. A. Bonner, J. Song, N. O. Keyhani, and R. A. Jensen. 2004. Inter-genomic displacement via lateral gene
transfer of bacterial trp operons in an overall context of vertical genealogy.
BMC Biol 2:15.
Song, J., C. Bonner, M. Wolinsky, and R. A. Jensen.
2005. The TyrA family of aromatic-pathway dehydrogenases in phylogenetic context. BMC Biology
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